libera/##covid-19/ Friday, 2021-04-09

BrainstormNew from The Lancet (Online): [Viewpoint] US–China health exchange and collaboration following COVID-19: Strong US–China collaboration on health and medicine is a crucial element of the global effort against COVID-19. We review the history of health collaboration and exchanges between the public and private sectors in the USA and China, including [... want %more?] → https://is.gd/1c0Gic00:32
BrainstormNew from Ars Technica: Science: B.1.1.7 variant now predominant coronavirus in US; cases spike in Michigan → https://is.gd/1KzKjy01:34
BrainstormNew from Reddit (test): CoronaVirus_2019_nCoV: CDC Says More Virulent British Strain Of Coronavirus Now Dominant In U.S. → https://is.gd/qYn6v002:25
BrainstormUpdates for Kharkiv Oblast, Ukraine: +4438 cases (now 111826), +85 deaths (now 2108) since 4 days ago — Odessa Oblast, Ukraine: +4407 cases (now 116407), +104 deaths (now 1985) since 4 days ago — Lviv Oblast, Ukraine: +4176 cases (now 112193), +74 deaths (now 2762) since 4 days ago — Kiev, Ukraine: +3859 cases (now 170517), +156 deaths (now 3701) since 4 days ago02:57
BrainstormNew from BMJ Open: Addressing HIV care, mental health and substance use among youth and young adults in the Bay Area: description of an intervention to improve information, motivation and behavioural skills: Objective Youth represent a population disparately impacted by the HIV epidemic. With most new HIV diagnoses occurring among adolescents and young [... want %more?] → https://is.gd/NwF0YA03:17
BrainstormNew from Virology.ws: A tapeworm drug to treat COVID-19?: Niclosamide (pictured) is a drug that has been approved in humans to treat infections with a variety of tapeworms. It might be useful for preventing SARS-CoV-2 replication and COVID-19 pathogenesis by inhibiting virus-catalyzed membrane fusion. Examination of the lungs of 41 patients who died of [... want %more?] → https://is.gd/X0fjIH03:27
BrainstormNew from r/WorldNews: worldnews: Scientists slam WHO-China report, demand 'full investigation' into COVID-19 origins → https://is.gd/T1q3kD03:57
BrainstormNew from The Indian Express: World: Brazil top court orders probe of Bolsonaro’s pandemic steps → https://is.gd/Ncbsv304:58
BrainstormNew from r/WorldNews: worldnews: Covid infections in Canada edge closer to US rate → https://is.gd/FM7cy106:31
BrainstormNew from r/WorldNews: worldnews: People under 50 turned away from Melbourne vaccination centre after new AstraZeneca advice - ABC News → https://is.gd/a2oDMN06:41
BrainstormNew from The Indian Express: World: Japan to add Tokyo, other areas to COVID-19 ‘quasi-emergency’ state → https://is.gd/WRdPnu06:51
BrainstormNew from r/WorldNews: worldnews: GOP House leader McCarthy says vaccine passports more fitting for ‘Communist China’ → https://is.gd/Z1Ftn107:02
BrainstormNew from The Indian Express: World: World’s wealthiest countries are getting vaccinated 25 times faster → https://is.gd/JNy5Vj08:34
BrainstormNew from r/Coronavirus: Daily Discussion Thread | April 09, 2021: Please refer to our Wiki for more information on COVID-19 and our sub. You can find answers to frequently asked questions in our FAQ , where there is valuable information such as our: → https://is.gd/PB3pHh09:06
BrainstormNew from EMA: What's new: Orphan: Orphan designation: Radio-iodinated (131I) anti-CD45 murine monoclonal antibody, Treatment in haematopoietic stem cell transplantation, 14/10/2016, Positive → https://is.gd/lBaaAb09:16
Haley[m]%cases France09:29
BrainstormHaley[m]: In France, there have been 4.9 million confirmed cases (7.3% of the population) and 97364 deaths (2.0% of cases) as of a day ago. 67.8 million tests were performed (7.2% positive). See https://offloop.net/covid19/?default=France for time series data.09:29
BrainstormNew from Medical Xpress: Sunlight linked with lower COVID-19 deaths, study shows: Sunnier areas are associated with fewer deaths from Covid-19, an observational study suggests. → https://is.gd/pVfFhE10:16
BrainstormNew from The Indian Express: World: China repeats call to resist ‘vaccine nationalism’, pledges to keep monetary support → https://is.gd/MUTw1v10:22
BrainstormNew from StatNews: Scientists work toward an elusive dream: a simple pill to treat Covid-19: The world has vaccines that can prevent most cases of Covid-19. It even has drugs that can help with the most serious symptoms. Now what it needs is a Tamiflu… → https://is.gd/oxPWaB10:44
BrainstormNew from Medical Xpress: Tokyo tightening virus measures nearly 100 days before Olympics: Japan's government will approve tighter coronavirus measures for the capital on Friday, weeks after lifting a state of emergency and with just over 100 days until the postponed Tokyo Olympics. → https://is.gd/BeuQV611:18
BrainstormNew from BMJ: What do we know about China’s covid-19 vaccines?: What vaccines has China developed?There are about a dozen Chinese vaccine candidates for covid-19, but five front runners have received emergency use approval in China as well as several other... → https://is.gd/z3B09R11:39
bingbotboomis this WHO affiliate?11:42
greymancalbasi_matrix:cointop11:51
BrainstormNew from Medical Xpress: India's hardest-hit state battles huge vaccine shortages: Leading hospitals in India's most coronavirus-hit state halted vaccinations Friday, citing shortages as infections across the country crossed 13 million and set a new daily record. → https://is.gd/2f0Y6F12:11
BrainstormNew from StatNews: Biotech: STAT+: Natural killer cells, primed with an antibody, induce remissions in patients with advanced blood cancer → https://is.gd/Nb4Fhh12:44
BrainstormNew from BMJ: How the JCVI sets who gets a covid-19 vaccine and when: What is the JCVI?The 16 experts who make up the independent Joint Committee on Vaccination and Immunisation (JCVI) advise UK health departments, help develop immunisation programmes, and identify... → https://is.gd/2HXFOS13:39
BrainstormNew from Derek Lowe: @JasonUkman: RT by @Dereklowe: Scientists work toward an elusive dream: a simple pill to treat Covid-19. → https://is.gd/vOed5C13:50
AtqueAny know about astra zeneca vaccine risks with blood clots?13:59
AtqueOpinions on it?13:59
eventcheck[m]Isn't coronavirus itself known to give blood clots?14:13
BrainstormNew from Politico: Coronavirus: Norwegian prime minister fined over lockdown-breaking birthday bash → https://is.gd/5dKE8Z14:23
finely[m]<Atque "Any know about astra zeneca vacc"> Check some of my recent posts.14:41
finely[m]<eventcheck[m] "Isn't coronavirus itself known t"> Yes14:42
kreyrenhttps://www.youtube.com/watch?v=huvdOBk7-Jc14:48
kreyren> Vaccine rollout in EU 'unacceptably slow' says WHO | COVID Update14:48
BrainstormNew from r/WorldNews: worldnews: Japanese doctors perform world's first living donor lung transplant to a Covid-19 patient → https://is.gd/9FjVoc15:30
BrainstormNew from Medical Xpress: Antipsychotic drugs may have protective effect against COVID-19: Two studies led by the Mental Health Unit of the Virgen del Rocio University Hospital and involving researchers from the US conclude that antipsychotic drugs could have a protective effect against SARS-CoV-2. For this reason, patients treated with these drugs have [... want %more?] → https://is.gd/IXElBx15:41
BrainstormNew from Medical Xpress: Balancing benefits and risks: Making sense of the latest vaccine news: Last night, the federal government announced substantially revised plans for the use of the AstraZeneca vaccine in Australia. → https://is.gd/4wBfmC15:52
BrainstormNew from Medical Xpress: No region in the world spared as virus cases, deaths surge: Hospitals in Turkey and Poland are filling up fast. Pakistan is restricting domestic travel to bring a surge in coronavirus infections under control. Even Thailand, which has weathered the coronavirus pandemic far better than many nations, is now struggling to contain [... want %more?] → https://is.gd/i4q4HG16:15
-RSSBot[LjLmatrix- Feed: Il Presidente Draghi incontra il Commissario Ue Gentiloni ( http://www.governo.it/it/articolo/il-presidente-draghi-incontra-il-commissario-ue-gentiloni/16584 )16:19
de-facto.title https://news.utexas.edu/2021/04/05/human-trials-begin-for-a-low-cost-covid-19-vaccine-to-extend-global-access/16:23
Brainstormde-facto: From news.utexas.edu: Human Trials Begin for a Low-Cost COVID-19 Vaccine to Extend Global Access - UT News16:23
de-facto.title https://en.wikipedia.org/wiki/NDV-HXP-S16:23
Brainstormde-facto: From en.wikipedia.org: NDV-HXP-S - Wikipedia16:23
de-facto.title https://science.sciencemag.org/content/369/6510/150116:26
Brainstormde-facto: From science.sciencemag.org: Structure-based design of prefusion-stabilized SARS-CoV-2 spikes | Science16:26
-RSSBot[LjLmatrix- Feed: Concorso, a 40 posti di Referendario di T.A.R. anno 2021: ampliamento dei posti e proroga della scadenza ( http://www.governo.it/it/articolo/concorso-40-posti-di-referendario-di-tar-anno-2021-ampliamento-dei-posti-e-proroga-della )16:29
de-facto "The most promising variant, Combo47, renamed HexaPro, contains all four beneficial proline substitutions (F817P, A892P, A899P, A942P) as well as the two proline substitutions in S-2P."16:34
de-factothe two proline subs in S-2P are K986P, V987P, hence HexaPro is Wuhan spike-glycoprotein with  (F817P, A892P, A899P, A942P and K986P, V987P)16:34
BrainstormNew from Medical Xpress: Inside Covid vaccine production at BioNTech's new plant: Decontamination chambers, tight-fitting protective suits, a controlled atmosphere: vigilance is the order of the day when making COVID-19 vaccines at the new BioNTech plant in Marburg, Germany. → https://is.gd/hpPMPi16:38
BrainstormNew from Medical Xpress: At a French warehouse, the logistics of racing out vaccines: In an unmarked warehouse on the outskirts of Paris, a precious cargo emerges from the icy cold mist: nearly 10,000 doses of the Pfizer-BioNTech vaccine have just been delivered. → https://is.gd/rMvDaW16:49
de-facto.title https://www.ema.europa.eu/en/news/meeting-highlights-pharmacovigilance-risk-assessment-committee-prac-6-9-april-202116:55
Brainstormde-facto: From www.ema.europa.eu: Meeting highlights from the Pharmacovigilance Risk Assessment Committee (PRAC) 6-9 April 2021 | European Medicines Agency16:55
rmonten[m]I was just about to post the same link.16:56
rmonten[m]4 cases of blood clotting events with Janssen, but it doesn't say how many doses have been administered.16:57
de-facto"PRAC has started a review of a safety signal to assess reports of thromboembolic events (formation of blood clots, resulting in the obstruction of a vessel) in people who received COVID-19 Vaccine Janssen."16:57
de-factooh dear.16:57
de-factoyeah it does not say out of how many indeed16:57
de-factoand that is the important point, how does the vaccination group compare to the expectation value from background control group of non-vaccinated individuals16:58
rmonten[m]still, it's likely the adenovirus vector?16:58
rmonten[m]which they both use16:58
de-factoi dont know, both are adenovirus vectors, yeah16:58
de-factoAstraZeneca uses ChAdOx1 and Jannsen AD.26 afaik16:59
bin_bashyeah that would be my thought too but more study is needed to be sure16:59
de-factoso different ones16:59
rmonten[m]there's this cryptic comment “unusual blood clots with low blood platelets” that seems to suggest that the symptoms are similar17:00
rmonten[m]right17:00
BrainstormNew from The Indian Express: World: As many countries pause AstraZeneca vaccine, others prescribe age limits for administering shot → https://is.gd/yECRAM17:00
rmonten[m]I remember Derek Lowe mentioned the adenovirus binding to platelets as a potential explanation. Looking back, he got that from this paper:17:05
rmonten[m].title https://www.researchsquare.com/article/rs-362354/v117:05
Brainstormrmonten[m]: From www.researchsquare.com: A Prothrombotic Thrombocytopenic Disorder Resembling Heparin-Induced Thrombocytopenia Following Coronavirus-19 Vaccination | Research Square17:05
BrainstormNew from ClinicalTrials.gov: (news): the Impact of Covid-19 Pandemic Stress on Pregnancy Outcomes → https://is.gd/8pqPnO17:11
BrainstormNew from ClinicalTrials.gov: (news): Monitoring Serologic Response to Severe Acute Respiratory Syndrome-2 (SARS-COV-2)/COVID-19 in Children → https://is.gd/AonFzH17:23
BrainstormNew from ClinicalTrials.gov: (news): Institutional Registry on Outpatient and Hospitalized COVID-infected Patients → https://is.gd/tbZkPY17:33
BrainstormNew from ClinicalTrials.gov: (news): Study of Intravenous Ampion in Adult COVID-19 Patients Requiring Supplemental Oxygen → https://is.gd/nsvql217:45
de-factormonten[m], yes also https://gth-online.org/wp-content/uploads/2021/03/GTH-Statement-AstraZeneca_englisch_3-29-2021.pdf17:48
de-factonot sure if its the same issue though, afaik the real cause itself is not understood17:48
de-factothe issue with the antibodies and the effect (the resulting problems) seem to be somewhat understood i guess, they provide a testing scheme17:49
de-factoi wonder if they do screening in AstraZeneca vaccinated people without problems for such antibody reaction17:49
de-factoif they include much more into their statistics they might be able to estimate an age specific risk for such rate but tragic progressions17:50
LjLGreat news about Janssen :/17:52
de-factoyet we dont know out of how many and if its similar to AstraZeneca at all, only that they investigate17:53
LjLde-facto: and also... a *separate* safety signal about AZ?17:55
LjLand more than 700 deaths today in Italy. Despite that, a few regions are reopening to one level down17:56
LjL(Including mine)17:56
BrainstormNew from ClinicalTrials.gov: (news): Efficacy and Safety of Three Different Doses of an Anti SARS-CoV-2 Hyperimmune Equine Serum in COVID-19 Patients → https://is.gd/jZ2AJs17:56
de-factoLjL, i am not sure if its separate, i understand it as two sides of the same coin, thrombocytopenia and the leaky blood vessels as well as the CVST17:58
de-factoabout the AZ only i mean17:58
de-factothe Janssen is separate from that (since its another vaccine)18:00
de-factoboth indeed employ Adenoviruses18:00
LjLde-facto: it says only 5 cases... Kinda sounds like a separate concern to me18:01
-RSSBot[LjLmatrix- Feed: Il Presidente Draghi incontra il segretario del Pd Enrico Letta ( http://www.governo.it/it/articolo/il-presidente-draghi-incontra-il-segretario-del-pd-enrico-letta/16586 )18:04
LjLde-facto: the agenda PDF they have at the bottom of the page makes me guess the events, or some of them at least, occurred in Belgium (page 11)18:07
BrainstormNew from Scientific American: COVID, Quickly, Episode 4: The Virtual Vaccine Line and Shots for Kids: Today we bring you the fourth episode in a new podcast series: COVID, Quickly. Every two weeks, Scientific American’s senior health editors Tanya... -- Read more on ScientificAmerican.com → https://is.gd/bJgx8P18:07
LjLde-facto: meanwhile, some guidance on how to treat the AZ issue from Britain https://b-s-h.org.uk/about-us/news/guidance-produced-from-the-expert-haematology-panel-ehp-focussed-on-syndrome-of-thrombosis-and-thrombocytopenia-occurring-after-coronavirus-vaccination and https://b-s-h.org.uk/media/19530/guidance-version-13-on-mngmt-of-thrombosis-with-thrombocytopenia-occurring-after-c-19-vaccine_20210407.pdf from ##science18:08
de-factoyeah pretty much the same as we already know18:15
BrainstormNew from Medical Xpress: New EU vaccine probe deepens Europe's COVID woes: Europe's stuttering vaccine rollout faced multiple shocks on Friday as EU regulators said they were reviewing side effects of the Johnson & Johnson shot and France further limited its use of the AstraZeneca jab. → https://is.gd/7gL3Z618:18
de-factoLjL, maybe you should add those links to the two you already have18:22
de-facto.links thrombocyto18:24
Brainstormde-facto, https://www.researchsquare.com/article/rs-362354/v1 (A Prothrombotic Thrombocytopenic Disorder Resembling Heparin-Induced Thrombocytopenia Following Coronavirus-19 Vaccination) is a preprint study released by the German Society for Thrombosis and Hemostasis Research (GTH) after a [... want %more?]18:24
LjLde-facto: I meant to add the EMA safety report. It's just I'm on phone right now. You mean the UK links?18:24
de-factoyup the uk links18:24
BrainstormNew from BBC Health: Coronavirus infections 'a sixth of January peak': ONS estimates that one-in-350 people in the UK currently have coronavirus → https://is.gd/4Jep5l18:39
de-factoso we have the sequence of the Janssen vaccine?18:40
de-factoalso what about Sputnik V? afaik the primer (or was it the booster) also uses Ad2618:42
de-facto.title https://www.nature.com/articles/s41541-020-00243-x18:43
Brainstormde-facto: From www.nature.com: Ad26 vector-based COVID-19 vaccine encoding a prefusion-stabilized SARS-CoV-2 Spike immunogen induces potent humoral and cellular immune responses | npj Vaccines18:43
BrainstormNew from Medical Xpress: COVID-19 vaccines bring optimism amid concerns about a fourth wave of infections: More than 60 million Americans have been fully vaccinated against COVID-19, according to the Centers for Disease Control and Prevention (CDC). The large scale vaccination efforts underway across the U.S. to vaccinate those eligible come at a time [... want %more?] → https://is.gd/GQEb1S18:50
de-factohmm does the final product contian tPA or not?18:54
rmonten[m]de-facto: good question, is there a similar monitoring system in any country where Sputnik V is used?18:54
de-factonot sure about htat19:00
de-factothings might be a little bit different in Russia? actually i dont know enough about their surveillance19:01
LjLIt's used in more countries than just Russia though... Including the EU (well, one entire country in the EU)19:16
rpifanyou mean sputnik V19:20
rpifanbavaria is trying to buy 2 million doses19:20
BrainstormNew from BMJ: Covid-19 vaccines save lives: At the time of writing, over 500 million doses of vaccines to combat SARS-CoV-2 have been delivered worldwide. Not every country has received an equal share, however. The differences in rollout have... → https://is.gd/M5xS9o19:32
rpifan500 million out of 7.6 billion19:36
finely[m]https://pluralistic.net/2021/04/08/howard-dino/#the-scream19:38
finely[m]More on Howard Dean's betrayal of humanity: quote19:38
finely[m]"The racist lie that brown people can't manufacture their own vaccines is being peddled to maximize profits for some of the cruellest, most profitable, most publicly subsidized companies on Earth – and it's not merely unfair, it's an existential threat to human civilization."19:38
finely[m]<de-facto "i wonder if they do screening in"> I heard a German group is working on a test for the antibody reaction. I couldn't find a good source for it though.19:40
BrainstormNew from Politico: Italy fears mob has infiltrated vaccination campaign: Deaths from coronavirus are rising as vaccines fail to reach elderly and vulnerable. → https://is.gd/Hc9ZDz19:42
finely[m]<rmonten[m] "there's this cryptic comment “un"> The platelet abnormalities are associated with the condition. White blood cells too.19:43
LjLas if there's anything it hasn't infiltrated19:43
rmonten[m](obvious yo momma joke implied)19:57
BrainstormNew from Politico: Hungary to assess Sputnik V vaccine for Slovakia use: It’s the latest twist in a row involving Slovakia's ex-prime minister, its drugs regulator and Russia over Sputnik V. → https://is.gd/J4oIlz20:03
BrainstormNew from Derek Lowe: @Dereklowe: Slovakian regulators say that the Sputnik vaccine they have received from Russia appears to have been produced in multiple (rather different) lots, with dosage formsand packaging, and via different processes. They're not [... want %more?] → https://is.gd/aVu1Tm20:35
BlankspaceHi20:45
BrainstormNew from FDA Press Releases: Coronavirus (COVID-19) Update: April 9, 2021: The FDA recommends health care personnel and facilities transition from the use of decontaminated disposable respirators, and issues warning letters to two companies for selling unapproved products with fraudulent COVID-19 claims. → https://is.gd/egkilG20:45
LjLhi Blankspace20:48
BlankspaceCovid is getting bad in India20:49
LjLyeah :( probably because of variants including E484K20:49
BlankspaceI know someone who died20:50
BlankspaceBecause of covid20:50
LjLi'm sorry20:50
LjLthe current curve for India does look really, really bad20:50
LjLperhaps the worst-looking spike i've seen for any country (that i've looked at)20:50
de-factoBlankspace, do you know how the portion of positive tests develops in India?20:51
LjL%links india20:51
BrainstormLjL, https://indianexpress.com/article/cities/delhi/coronavirus-noida-aarogya-setu-app-police-6395945/ (India is forcing people to use its covid app, unlike any other democracy), according to Technology Review, although it does on to qualify it's not just compulsory across the country; [... want %more?]20:51
LjL%links india tracker20:51
BrainstormLjL, https://outbreak.info/ (outbreak.info) is not primarily a case tracker, but it does offer various case visualizations including for some sub-national regions (United States, Brazil, India...)20:51
LjLpfft20:51
LjL(i wanted https://www.covid19india.org/)20:51
BlankspaceWhat do you mean De facto20:51
BlankspaceI did not understand20:52
LjLBlankspace, he wants to know how many tests are done, in comparison to the people who are found positive. so the ratio between positives and tested20:52
LjLde-facto, https://www.covid19india.org/ has the amount of tests20:52
LjLalso vaccines20:52
de-factofor every 100 tests that have been done in India, how many have a positive result?20:52
LjLfrom 16.3% in Maharashtra, down to 0.2 in Arunchal Pradesh. overall in India, 7.9%20:53
de-factooh damn, the number of tests did not really increase (maybe a little bit only), yet the number of positive cases raise exponentially20:54
LjLat least i think that's what those numbers are20:54
LjLactually maybe not, ignore me20:54
de-factoyeah i mean over time20:54
LjLthey should have an option to switch to English-without-lakh-and-crore :P20:55
de-factoindeed20:55
Blankspace10 lakh is 1 million20:56
de-factoBlankspace, do you have an idea why there is such a big increase in new infections?20:56
BlankspaceI think people took it lightly didn't follow the protocol but nobody knows why it is spreading this rapidly20:57
BlankspaceIt's really scary we've very high population density20:57
BlankspaceIt could be varied reasons20:57
BlankspaceAnd there are mutants also20:58
de-factofrom the spike something changed (relative to prior increase), maybe mutants, maybe something in behavior, maybe something else?20:59
LjLNew Zealand has halted all travel from India, including New Zealand citizens. When New Zealand does COVID things, they usually know what they're doing...20:59
LjL(and you know, New Zealand has strict quarantines for incoming travelers anyway, but in this case they just halted it)20:59
de-factohttp://metrics.covid19-analysis.org/20:59
de-facto.title20:59
Brainstormde-facto: From metrics.covid19-analysis.org: Visualizing COVID-19 Spread Metrics20:59
BlankspaceI am sure they'll do some arrangement for their own citizen21:00
LjLwell, it's a temporary ban21:00
LjLbut i'm just saying if NZ is taking the India situation seriously, then it's probably serious21:01
de-facto.title https://imgur.com/a/iqQwojD https://i.imgur.com/p79npc2.png src: http://metrics.covid19-analysis.org/21:01
Brainstormde-facto: From imgur.com: COVID-19 India: Cases and Reproduction number Rt - Album on Imgur21:01
BlankspaceIt's serious21:01
LjLIndia is a big vaccine producer though. they should vaccinate as quickly as possible21:01
BlankspaceSeriously bad21:01
BlankspaceWe've shortage of vaccines21:02
de-factoIndia having a reproduction of Rt = 1.37 that is serious indeed21:02
de-factomeaning daily new infections double each t2 = ts Ln(2) / Ln(Rt) = 5.2d Ln(2) / Ln(1.37) = 5.2d 2.2 ~ 11.5 days21:04
BlankspaceHave they got no solution in past 2 yrs21:05
de-factoit means for each 10 currently infected people there are 13.7 new infections each 5.2 days21:06
BrainstormNew from Scientific American: Coronavirus News Roundup, April 3 – April 9: Pandemic highlights for the week -- Read more on ScientificAmerican.com → https://is.gd/oGtPcB21:06
de-facto.title https://pib.gov.in/PressReleaseIframePage.aspx?PRID=170717721:09
Brainstormde-facto: From pib.gov.in: document without title21:09
de-facto"Genome Sequencing by INSACOG shows variants of concern and a Novel variant in India"21:10
de-facto.title https://timesofindia.indiatimes.com/city/mumbai/maharashtra-double-mutation-variant-not-linked-to-surge-yet/articleshow/81677389.cms21:10
Brainstormde-facto: From timesofindia.indiatimes.com: Maharashtra: Double mutation variant not linked to surge yet | Mumbai News - Times of India21:10
LjL"not linked yet" seems like what agencies like the EMA like to say21:10
de-factowe already talked about that few days ago here21:11
de-facto(hence my repetition of the links from scrollback buffer)21:11
de-factopossibly related? not sure21:12
de-facto.title https://www.biorxiv.org/content/10.1101/2021.03.18.436013v121:13
Brainstormde-facto: From www.biorxiv.org: The B1.351 and P.1 variants extend SARS-CoV-2 host range to mice | bioRxiv21:13
de-factoafaik the double mutant in India also contains E484K21:13
rpifannice21:13
rpifandouble mutant21:13
de-factoyeah its what they call it, nothing new or scary21:15
de-factothey just mean mutant (as all other VoCs) with two mutations E484Q and L452R21:16
de-factoin above paper they say "Here we show that unlike the initial virus, VOCs are able to infect common laboratory mice, replicating to high titers in the lung"21:17
de-facto"The E484K mutation found in the RBD of variants B.1.351 and P.1 is also located in the ACE2 binding interface, resulting in a more positively charged RBD surface, in turn contributing to better binding to the negatively charged patch in mACE2, and might explain the differences observed in vivo."21:18
de-facto"This interpretation is consistent with recent results obtained with pseudotyped viruses showing that the N501Y, E484K and their combination increase entry in mACE2 expressing cells."21:18
de-factoB.1.351 is the South African SARS-VoV-2-VoC, P.1 is the Brazilian VoC21:19
Blankspace__So we we going to die in this pandemic21:19
de-factoboth contain E484k21:19
de-factoBlankspace__, no not at all21:19
de-factoits problematic but its not that lethal21:20
Blankspace__We don't know21:21
de-factothere are studies, they look for antibodies in the blood of people, and if the blood contains antibodies it means those people had contact with the virus. some of them did not even notice (so called asymptomatic cases)21:21
de-factoby such seroprevalence studies they can find out for each 100 people how many had contact with the virus21:22
de-factoif they do that for each age group they can give a probability for exposure as function of age21:22
de-factothat is the attack rate, or infection rate21:23
de-factonow for each such age group they also know how many people did have a severe progression that leads to death21:23
de-factoso they know the death rate per infection rate21:23
de-factothat is called the infection fatality rate (IFR)21:24
de-factothe IFR gives the probability for an infected individual to have a lethal outcome21:24
de-facto.title https://link.springer.com/article/10.1007%2Fs10654-020-00698-121:25
Brainstormde-facto: From link.springer.com: Assessing the age specificity of infection fatality rates for COVID-19: systematic review, meta-analysis, and public policy implications | SpringerLink21:25
de-factoTheir Log10(IFR) = -3.27 + 0.0524 * age is the same as IFR[age] = Exp[Ln[2] age / 5.74485 ] / 1862.09 in percent or ifr[age] = Exp[Ln[2] age / 5.75 ] / 186209 normalized to 1 doubling with each increase of age by 5.75 years, ifr[85.72] = 1/6 or ifr[72=2021-1949] = 1/31.4121:26
BrainstormNew from r/WorldNews: worldnews: Pandemic, hunger force thousands into sex work in Mexico → https://is.gd/KgBe7O21:27
de-facto.title https://imgur.com/a/Vh4eukV https://i.imgur.com/uqSkTG7.png21:28
de-factothat is for the B.1 variant before all the SARS-CoV-2-VoCs occurred, its the D614G mutation21:29
de-factothe VoCs might have a higher fatality rate, but not by much, e.g. B.1.1.7 (the UK VoC) has something like 164% IFR of B.121:30
de-factoso we are NOT all going to die in this pandemic, it is serious but not the lethality of SARS-CoV-2 is quite low in the young and healthy, it rises exponentially with age though, doubling each 5.75 years21:33
de-factoand vaccinations seem to be able to prevent severe progressions as well as fatal outcomes quite efficiently21:33
Blankspace__I am going to sleep21:34
de-factofor example in Germany now the age of people in the hospital goes down because the elderly were vaccinated first, hence are much much less likely to have severe progressions21:34
de-factoso vaccination really will help a lot21:34
Blankspace__Shortage is there21:35
de-factoyes thats true21:35
de-factowe really need much more production capacity for vaccinations21:35
de-factofortunately India got one of the biggest production facilities with the State Serum Institute21:35
de-factoand afaik they postponed export of vaccinations till summer, so i guess they are working hard on ramping up vaccinations for Indian people21:36
BrainstormNew from Medical Xpress: Scientists find clues to why AstraZeneca's vaccine may cause clots: (HealthDay)—Doctors might have figured out why AstraZeneca's COVID-19 vaccine may cause life-threatening blood clots in very rare cases. → https://is.gd/BJYVl821:37
de-factoyet breaking the current peak immediate non-pharmaceutical-interventions (NPIs) are requires, reducing contact rates between people and thereby lowering the probability for virus transmission21:37
de-factothe reproduction is R = Transmissibility * ContactRate * DurationOfInfectiousness21:38
de-factoso if currently R ~ 1.37 it means the increase in daily new infections could become constant (hence R~1) for a reduced contact rate of 1/1.37 = 0.7221:39
de-factoif a reduction of cases is the goal (e.g. R~0.7) it would mean contact rate would have to decrease to 1.37/0.7 ~0.51, so for each two contacts right now there only should be allowed to be 1 contact in such a decreasing scenario21:41
de-factoi really do hope India is going to get this under control soon21:53
BrainstormNew from r/WorldNews: worldnews: Brazil Top Court Orders Probe Of Bolsonaro's Pandemic Steps → https://is.gd/MRgF6222:08
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