libera/##covid-19/ Friday, 2021-07-02

de-factogenera, https://pbs.twimg.com/media/EYgO5i-WsAEl7Yt?format=jpg&name=large00:02
generaboah da weiß ich jetzt schon wovon ich heut nacht schlecht träumen werde00:09
de-factoat least now you know where all the structural proteins are located in the virion :D00:10
nixonixthis site had some good images00:12
nixonixhttps://www.medicalimages.com/imageSearcher.do?keywords=sars-cov-2&isMedical=1&logKeywords=100:12
nixonixi once saw a great simulated animation of vibrating s protein, but lost it and never found again. when searching those i found were all inferior to that, but it was around year ago00:13
nixonixit was something like 15ns or so, i think00:14
BrainstormNew from Francois Balloux: @BallouxFrancois: R to @BallouxFrancois: The SARSCoV2 T-cell X-immunity saga has been an interesting journey for me. I initially thought it made sense (and got massive abuse for it). I then changed my views to it being probably anecdotal, and now, I'm essentially back to square one. Science is interesting at times.6/ → https://is.gd/Qt5CqU00:20
BrainstormUpdates for Tunisia: +6776 cases (now 426879), +106 deaths (now 15065) since a day ago — Zimbabwe: +1357 cases (now 51221), +19 deaths (now 1808) since a day ago00:37
BrainstormNew from The Lancet (Online): [Seminar] Acute respiratory distress syndrome: Acute respiratory distress syndrome (ARDS) is an acute respiratory illness characterised by bilateral chest radiographical opacities with severe hypoxaemia due to non-cardiogenic pulmonary oedema. The COVID-19 pandemic has caused an increase in ARDS and highlighted challenges [... want %more?] → https://is.gd/CemQSN00:41
nixonixinteresting subject, that balloux's tweet. heres something:00:48
nixonix.title https://www.medrxiv.org/content/10.1101/2020.12.07.20245241v2.full00:48
Brainstormnixonix: From www.medrxiv.org: Lack of antibodies against seasonal coronavirus OC43 nucleocapsid protein identifies patients at risk of critical COVID-19 | medRxiv00:48
Krey[m]does anyone know how pottery works00:50
Krey[m]x.x00:50
pwr22Magic00:53
pwr22🪄00:54
pwr22🫖00:55
nixonixsome of you may remember those strange t-cell reacivities for 50% of people in singapore, never having sars2 or sars1, and not t-cells associated to hcov's00:55
nixonixoriginating possibly from exposure to some animal coronaviruses, without actually getting infection00:56
nixonixthe same could happen with sars2, exposure without infection, giving perhaps protection too, perhaps not. reactivity doesnt necessrily mean protection, whatever the source for it00:57
nixonix.title https://pubmed.ncbi.nlm.nih.gov/33582369/00:59
Brainstormnixonix: From pubmed.ncbi.nlm.nih.gov: Pre-existing T-cell immunity to SARS-CoV-2 in unexposed healthy controls in Ecuador, as detected with a COVID-19 Interferon-Gamma Release Assay - PubMed00:59
Krey[m]<pwr22 "Magic"> ah thanks it all makes sense now, i need a transmutation circle and sacrifice a human to it01:11
* Krey[m] uploaded an image: (284KiB) < https://libera.ems.host/_matrix/media/r0/download/matrix.org/CSRtTAKSINeneWIXCMIZKMXu/image.png >01:18
Krey[m]holySh@%! that scared me01:18
pwr22Golem?01:25
Krey[m]The final form of campbell when goverment is not listening to him01:30
Krey[m]:p01:30
BrainstormNew from Reddit (test): CoronaVirus_2019_nCoV: Antivax antimask Covid deniers blocked the road at a vaccine center and harass the people waiting in line → https://is.gd/vgGpt101:33
BrainstormUpdates for Togo: +45 cases (now 13962), +1 deaths (now 130) since 19 hours ago01:39
nixonixthat reddit video - how is it a scam?01:44
nixonixppl are faking their symptoms and deaths, like those moon visits, that was it spielger who made those in studio?01:45
nixonixhttps://twitter.com/ashwil13/status/140750972808377959201:45
nixonixspielberg01:46
nixonixat least this guy puts out some effort:01:47
nixonix.title https://dryburgh.com/byram-bridle-coronavirus-vaccine-concerns/01:47
Brainstormnixonix: From dryburgh.com: "I would probably prefer to have natural immunity" — Viral Immunologist01:47
BrainstormNew from r/WorldNews: worldnews: Bangladesh, the most densely populated country in the world, reports highest ever Covid deaths on first day of strict lockdown with a 26% positivity rate → https://is.gd/GvbYfs01:54
lavadonutwhat % of viral immunologists would prefer to have natural immunity01:57
lavadonut"natural immunity" to viruses can have consequences way down the line02:01
lavadonutlike chickenpox/shingles02:01
nixonixvery low %. he is an anti mrna vaccine guy, whose arguments are used by anti-vaxers02:02
nixonixhe has his own whole virus vaccine in development, which is possibly coming out in 2-4 years. just got over 200k for it02:03
BrainstormUpdates for India: +330 deaths (now 399459) since 17 hours ago02:04
lavadonutbreaking news: non-mrna vaccine developer says mrna vaccines are bad02:05
LjLlavadonut, that's more than immunity (or less than immunity) though, that's the virus staying in the body forever02:10
LjLwhich... to be fair, is not quite ruled out for COVID, either02:10
lavadonutbut it's a prerequisite for natural immunity02:10
lavadonutyou don't get to say "i would rather have natural immunity, minus the inherent drawbacks of course"02:10
LjLyes, for those viruses02:11
LjLbut there are also fortunately plenty of viruses that don't stay in the body forever02:11
lavadonutwhat about epstein-barr02:11
LjLyes, and herpes02:11
LjLwithout going to HIV which takes it to the next level02:12
nixonixheres some debunking for some of byram bridles claims:02:12
nixonix.title https://healthfeedback.org/claimreview/byram-bridles-claim-that-covid-19-vaccines-are-toxic-fails-to-account-for-key-differences-between-the-spike-protein-produced-during-infection-and-vaccination-misrepresents-studies/02:12
LjLstill doesn't mean all viruses do it, or even a majority02:12
Brainstormnixonix: From healthfeedback.org: Byram Bridle’s claim that COVID-19 vaccines are toxic fails to account for key differences between the spike protein produced during infection and vaccination, misrepresents studies - Health Feedback02:12
lavadonutwell i'll be taking my moderna vaccine all the way to the bank02:12
nixonix.title https://factcheck.afp.com/posts-misrepresent-us-study-dangers-coronavirus-spike-protein02:17
Brainstormnixonix: From factcheck.afp.com: Posts misrepresent US study on dangers of coronavirus spike protein | Fact Check02:17
nixonixalso i think he has claimed spike protein of mrna vaccines (but not his own vaccine???) would cross the blood-brain barrier, which happened in a mouse study02:19
nixonixit did happen, but not when they used mice with humanized blood-brain barrier02:19
nixonixhigher s1 concentrations than whole spikes in SIMOA assay, after vaccination, are likely from cells that immune cells destroyed, which then release broken or partial s proteins to plasma02:22
nixonixand apparently s1 can also come from cells surface when enzymes recycle cells surface proteins like they normally do02:25
joergare there any published calculations for Delta, similar to those about B1.1.7 https://www.sueddeutsche.de/wissen/coronavirus-mutante-b117-daten-1.5197700 back in january/february?02:27
nixonixwhat kind of calculations?02:29
BrainstormUpdates for Guatemala: +2855 cases (now 296438), +67 deaths (now 9282) since 22 hours ago — France: +17 deaths (now 111145) since 23 hours ago — Netherlands: +529 cases (now 1.7 million) since 23 hours ago — Canada: +460 cases (now 1.4 million) since 23 hours ago02:29
joergthe kind that generates diagrams/plots/forecasts like those in that article02:32
LjLjoerg, for the UK, https://covid19.sanger.ac.uk/lineages/raw is good, they try to normalize things to resemble an unbiased sample02:32
nixonixoh, i had a look without js on, so i didnt see pics02:32
LjLfor other countries, you may want to get the de-facto grapher going :P02:32
joerganswering the question if we are on a good path still or already on the beginning of next wave02:33
LjLde-facto said by his calculations, Delta should become prevalent in Germany by July 402:33
nixonixthey have estimated the share of indian variant to double in every 2 weeks or so, when the dominating variant is 1.1.702:33
LjLso, just about now02:33
joerg>>Delta should become prevalent in Germany by July 4<< sounds about right, however aiui what really matters is not when it becomes prevalent but if the total number of Delta-cases is rising or going down02:35
LjLi think another wave is unavoidable. but whether it will have a considerable amount of deaths, so far the UK seems to indicate maybe not02:35
LjLwell, it's definitely rising for now!02:35
nixonixuntil its close to 50%. as its roughly a sigmoid curve limited to 100%...02:35
LjLalthough Sanger seems to indicate it's been declining for a bit now in the UK02:35
nixonixbut there were differencies in spreading of b.1.1.7 between countries. maybe some countries succeeded to limit importing it and then tracked down the clusters more efficiently. so it can be slowed down02:37
nixonixlike denmark and norway are trying hard to do02:37
LjLwe still have more deaths than the UK despite having had far fewer cases for quite a while now http://offloop.net/covid19/?default=United%20Kingdom;Italy&byPopulation=yes&cumulative=no&smooth=yes02:38
nixonixmaybe in some groups other less fit variants can gain. then are those with more immune evasion abilities vs vaccinated etc02:38
LjLnot sure if that tells you that Delta in the UK isn't able to cause many deaths, or just that Italians keep dying more easily because we kinda always did during COVID ;(02:38
joergfor B1.1.7 iirc the "goal" was to reach R_t<0.7 to compensate for later impact of the new variant. We reached R_t=9.6 4 weeks and a little bit less that 2 weeks ago, we are at ~ 0.85 now. I just wonder if that might suffice or not02:38
nixonixuk official death numbers miss a lot, even ONS had a lot higher numbers, and they missed too compared to excess deaths. spring 2020, not sure how it is now02:39
joergR_t=0.6 even02:39
LjLjoerg, well, for that it may still be useful to know that after July 4 it will be prevalent. because that means after that time, if the R goes up, Delta is going up, if the R goes down, Delta is going down02:39
LjLi mean, once it's the prevalent variant in a given country, it's dominating the R02:40
joergsort of, yes02:40
joergso us being at 0.85 now ( http://reisenweber.net/et_al/covid/covid19_statistics.htm ) isn't all too bad02:41
nixonixEU curve has started to go up a bit. too bad theres no combined EU curves for shares of positive tests02:43
LjLi don't know, maybe not, but it looks like a noisy graph. maybe it would be wise to wait like a week, at least, after july 4 (supposing that is the correct day) to see what's happening02:43
nixonixbecause it seems they are testing less. and that information owid gets isnt very recent02:43
LjLnixonix, not even sure if that would be useful given the varying testing strategies. we have separate curves in Italy for PCR and rapid tests, and they look very different02:44
nixonixyou need to check both share of positive test, and tests made per 100002:44
nixonixrapid tests there, i assume they are confirmed with PCR?02:45
nixonixso you could just use those PCR numbers, both share of positives and tests made02:45
LjLnixonix, what about Covidly? it doesn't have a *graph* unifying the tests and cases for the EU, but it does have testing data02:45
BrainstormNew from Science Daily: COVID-19 test offers solution for population-wide testing, scientists say: Researchers report real-world results on SwabSeq, a high-throughput testing platform that uses sequencing to test thousands of samples at a time to detect COVID-19. They were able to perform more than 80,000 tests in less than two months, with the test [... want %more?] → https://is.gd/k5doWF02:45
LjLnixonix, i suppose positive ones are confirmed by PCR, but i'm just saying that different testing scenarios look different02:47
joergif our politicians *again* just watch the numbers going up without immediately adapting measures to compensate early, I promise I convert to a militant corona-measures-fighter02:48
nixonixyeah, but if you want to see, like if spain is really stable or not, if their cases curve is stable, checking those test curves might tell the truth. unless they havent sent data recently...02:48
nixonixor released02:49
nixonixi dont find that type of information from covidly. theres cases to test ratio, but i think its total for the whole epidemic02:51
LjLhmm bummer, the Covidly JSON doesn't seem to have testing, even though they have testing in the graphs02:51
LjLnixonix, well there's tests, and there's cases, for each country02:51
nixonixwith dates? so you could get that info by day and do your own curves?02:52
nixonixby date02:52
LjLnixonix, by date yes, on the graph, go to like https://covidly.com/graph?country=Finland&state= and click the "Tests" checkbox02:53
LjLbut again if it's not in the JSON it would have to be tediously gotten manually02:53
LjLthe JSON is at https://covidly.com/history if you can look better than me02:53
LjLthat's not a public API so try not to do anything too boldly noticeable :P02:54
LjLin the totals in the json, i see vaccinations, which they added "recently" (obviously it wasn't there in 2020...) but i don't see any number corresponding to the tests02:54
LjLand "history" has the same 0 1 2 3 4 numbers02:55
nixonixah, i was clicking tab for tests. but not positives, just for tests made?02:56
LjLnixonix, well "positives" is cases...?02:57
LjLbut i'm surprised it's not in the json because i thought the json is what the site itself was using to get data from (it gets loaded when you load a page)02:57
nixonixyeah.. not necessarily, but roughly. so it could be sued02:57
nixonixused02:57
joergthanks!02:59
joergo/02:59
LjLjoerg won't stay joined 'cause i "threatened" him by opping up once03:01
LjLbit of a low bar for leaving a channel i'd say03:01
LjLin fact i'm opped up right now! hope i'm not threatening anyone :P03:02
jacklswintimidating :D03:03
jacklswwoops no more03:03
nixonixbye03:06
BrainstormUpdates for Cyprus: +473 cases (now 76333) since 22 hours ago03:06
Krey[m]<LjL "joerg won't stay joined 'cause i"> fufufu stop bullying people03:08
BrainstormUpdates for Germany: +1501 cases (now 3.7 million), +227 deaths (now 91530) since 14 hours ago03:31
BrainstormNew from NPR: Johnson & Johnson's COVID Vaccine Is Effective Against The Delta Variant, Studies Find: The results follow similar announcements about the Pfizer and Moderna vaccines, in the fight against the fast-spreading delta strain. → https://is.gd/Zz7PQ103:47
LjLis it very weird I'm almost looking forward to the probable side effects of my second Pfizer dose?04:04
LjLi usually get very bummed when i'm feeling even mildly ill04:04
lavadonutthat is weird04:05
lavadonut2nd dose moderna side effects were awful04:05
lavadonutfelt like the actual flu04:06
LjLwell, maybe i'll change my mind once i actually feel them04:07
LjLi felt nothing with the first dose except sore arm04:07
lavadonutmy first dose was also barely anything04:08
lavadonuti had the joint pain... hope that isn't a sign of arthritis in my future :')04:09
BrainstormUpdates for Isle of Man: +7 cases (now 1620) since a day ago04:33
nanaLjL: you never got the 2nd dose?04:44
LjLnana, "never" is a strong word, i'm due to get it in 6 days04:45
LjLwhich is lucky because if i had gotten AZ that'd have been a much longer wait04:46
LjLlavadonut, why do you think it could be a sign of arthritis?04:46
LjLi always have join pain when i'm feeling bleh :P04:46
nanaseems like your 1st was a long time ago04:47
LjLnah04:47
LjL5 June04:47
nanagot mine @2 weeks04:47
LjLnana, that's a bit too close...04:48
LjLminimum should be 21 days apart04:48
nanaactually maybe it was 3 nvm04:48
LjLwell yeah it can be 3 here but up to 48 days is acceptable, so mine was around a month apart, which is fine04:48
nanavaccines are poorly understood by the general public it seems04:51
LjLthe general public is a varied lot04:52
LjLwhat do you think is particularly misunderstood?04:52
nanainstead of lotteries and free snacks, if there was some education04:52
lavadonutmaybe you have arthritis04:57
BrainstormNew from The Indian Express: World: J&J’s says its single-shot Covid-19 vaccine shows strong activity against Delta variant → https://is.gd/Hp79l704:59
BrainstormUpdates for Liechtenstein: +3 cases (now 3039) since a day ago05:11
BrainstormNew from The Indian Express: World: Novavax says Taiwan has opted to get firm’s Covid vaccine via COVAX → https://is.gd/9jQE6805:19
BrainstormUpdates for Thailand: +6087 cases (now 270921), +61 deaths (now 2141) since 23 hours ago — Mexico: +8016 cases (now 2.5 million), +201 deaths (now 233248) since 23 hours ago — Bahamas: +149 cases (now 12735) since a day ago — Australia: +42 cases (now 30684) since 23 hours ago05:36
Kapten_Krayt0m_Does the vax really make people magnetic?05:47
BrainstormUpdates for South Korea: +826 cases (now 158549), +3 deaths (now 2024) since 23 hours ago06:00
BrainstormNew from The Indian Express (Health): Life-style: Sonam Kapoor recommends these DIY face masks for healthy, glowing skin → https://is.gd/GRsdjg06:33
BrainstormUpdates for Liberia: +211 cases (now 4304), +1 deaths (now 129) since a day ago — Belgium: +754 cases (now 1.1 million), +7 deaths (now 25180) since 22 hours ago06:38
BrainstormNew from The Indian Express: World: Sydney braces for rise in COVID-19 cases as Delta outbreak worsens → https://is.gd/FppWvc07:05
BrainstormUpdates for England, United Kingdom: +22515 cases (now 4.2 million), +16 deaths (now 112710) since a day ago — Unknown, Peru: +5489 cases (now 23948), +356 deaths (now 1781) since a day ago — Scotland, United Kingdom: +4234 cases (now 285456), +6 deaths (now 7722) since a day ago — Saint Petersburg, Russia: +1612 cases (now 471264), +115 deaths (now 16461) since a day ago07:40
BrainstormNew from The Indian Express: World: US Military and veterans struggle with vaccination rates in their ranks → https://is.gd/iJDHK408:07
BrainstormUpdates for India: +46617 cases (now 30.5 million), +1101 deaths (now 400312) since 15 hours ago08:36
BrainstormNew from Reddit (test): COVID19: Scientists quit journal board, protesting ‘grossly irresponsible’ study claiming COVID-19 vaccines kill → https://is.gd/39JDHc08:59
Krey[m]<LjL "is it very weird I'm almost look"> did you told them to aspirate?08:59
BrainstormNew from r/Coronavirus: Daily Discussion Thread | July 02, 2021: Please refer to our Wiki for more information on COVID-19 and our sub. You can find answers to frequently asked questions in our FAQ , where there is valuable information such as our: → https://is.gd/BDK9we09:10
BrainstormUpdates for British Virgin Islands: +42 cases (now 392) since 23 hours ago09:38
BrainstormNew from Reddit (test): Covid2019: WHO tells Cuba to publish its COVID-19 vaccine data and to seek approval for COVAX → https://is.gd/I1VMrk10:01
BrainstormUpdates for Fiji: +404 cases (now 5253), +1 deaths (now 25) since 23 hours ago10:09
BrainstormNew from WHO Euro: Largest disruption to schooling in history due to COVID-19 measures must not rob children of their education and development: Schools should remain open for as long as possible with adequate public health and social measures in place, and governments should use the summer months to implement measures that protect in-person schooling [... want %more?] → https://is.gd/QOwQCL10:21
BrainstormUpdates for Lesotho: +128 cases (now 11544) since 23 hours ago10:34
BrainstormNew from StatNews: Opinion: The health care workforce is understaffed for life after Covid-19: As the U.S. gradually unburies itself from the Covid-19 pandemic, some people have been sounding the alarm about looming shortages of physicians and nurses. They should be equally worried about… → https://is.gd/VZYRuA10:53
Krey[m]hmm11:06
Krey[m]poked myself 4 times my hands are bloody and that hugging SH!^@^ is still not measuring11:06
Krey[m]then i relized that the blood has to be from the bottom of the test strip11:06
Krey[m]got glucometer11:06
Krey[m]-.-"11:06
BrainstormNew from The Indian Express (Health): Health: How can you protect yourself from non-Covid illnesses in the monsoon? → https://is.gd/y8GaFR11:24
BrainstormNew from The Indian Express: World: Japan could face vaccine crunch as it nears Olympics start → https://indianexpress.com/article/world/tokyo-olympics-2020-covid-vaccine-crunch-7385916/11:36
Krey[m]DW reports "Delta Plus" variant https://youtu.be/AFoFsLxhdi811:46
Krey[m]Epsilon Variant?11:47
Krey[m]LjL: ^11:47
* Krey[m] is getting more suspicious that someone in india is engineering these 11:50
Krey[m]%cases india11:51
BrainstormKrey[m]: In India, there have been 30.5 million confirmed cases (2.2% of the population) and 400312 deaths (1.3% of cases) as of 3 hours ago. 414.3 million tests were performed (7.4% positive). Fatality can be broadly expected to lie between 0.4% (assuming prevalence as in tests) and less than 1.3% (considering only deaths and recoveries). See https://offloop.net/covid19/?default=India for time series data.11:51
Krey[m]smh did the bridge broke again11:51
generai v been told its intentional. but arent you [m] ?12:01
kreyrenLjL, i assume that your matrix bridge is hugged again12:02
kreyrenDW reports "Delta Plus" variant https://youtu.be/AFoFsLxhdi812:02
* kreyren goes back to his safe place on matrix12:03
BrainstormNew from ScienceNews: What experts know so far about the delta variant: The variant, which first emerged in India, is outcompeting other highly transmissible forms of the coronavirus as it spreads around the world. → https://is.gd/hqHv8c12:08
rpifandw produces more english content then german12:20
rpifanthats a bit shit12:20
BrainstormNew from BMJ: Covid-19: Millions could be offered booster vaccinations from September: Covid-19 booster vaccinations should be offered in England from September 2021, the Joint Committee on Vaccination and Immunisation has advised. But some experts have questioned the necessity and the... → https://is.gd/Niadbw12:29
BrainstormUpdates for Germany: +1504 cases (now 3.7 million) since 23 hours ago12:32
BrainstormNew from r/WorldNews: worldnews: Delta variant sweeps Asia, prompting curbs as vaccination remains tepid → https://is.gd/CMtFML12:50
zutt%cases finland12:54
Brainstormzutt: In Finland, there have been 95964 confirmed cases (1.7% of the population) and 973 deaths (1.0% of cases) as of 21 hours ago. 5.4 million tests were performed (1.8% positive). Fatality can be broadly expected to lie between 1.0% (assuming prevalence as in tests) and less than 2.1% (considering only deaths and recoveries). See https://offloop.net/covid19/?default=Finland for time series data.12:54
BrainstormNew from ECDC: Data on COVID-19 vaccination in the EU/EEA: The downloadable data files contain information on COVID-19 vaccination in the EU/EEA. The data are presented in the Vaccine Tracker and collected through The European Surveillance System (TESSy). → https://is.gd/tmWhQm13:11
de-facto.title https://arxiv.org/abs/2106.1112913:32
Brainstormde-facto: From arxiv.org: [2106.11129] The Effectiveness of Strategies to Contain SARS-CoV-2: Testing, Vaccinations, and NPIs13:32
BrainstormUpdates for Indonesia: +25830 cases (now 2.2 million), +539 deaths (now 59534) since a day ago13:34
pwr22Just read that apparently my astrazeneca vaccines don't count in the EU passport scheme13:38
pwr22Not that I'm really planning to travel around but as far as I'm aware the data in the UK is indicating it works well enough to keep problems from even the delta variant at bay so the EU can **** right off with it's political bull****13:39
pwr22No offence meant to anyone in the EU, I mean the government13:40
pwr22Seems like it is if it comes from India, not sure how to verify my batches are legit13:42
de-factoInterestingly rapid-ag-tests are as efficient as seasonality (~40%) in reducing reproduction13:46
de-factothats a lot13:46
de-facto"The objective of this study is to explain the quantitative effects of these policies on determining the course of the pandemic, allowing for factors like seasonality or virus strains with different transmission profiles. To do so, the study develops an agent-based simulation model, which is estimated using data for the second and the third wave of the CoViD-19 pandemic in Germany."13:47
de-facto"The paper finds that during a period where vaccination rates rose from 5% to 40%, large-scale rapid testing had the largest effect on reducing infection numbers. Frequent large-scale rapid testing should remain part of strategies to contain CoViD-19; it can substitute for many non-pharmaceutical interventions that come at a much larger cost to individuals, society, and the economy."13:48
BrainstormNew from The Indian Express (Health): Art and Culture: Shillong Chamber Choir, Parikrama perform to raise funds for Covid-affected children → https://is.gd/Rspvmw14:04
BrainstormNew from BBC Health: (news): Covid: Britons reassured over India-made Covishield jabs and EU travel → https://is.gd/xkMpbd14:14
de-factoI think bi-weekly tests at both, schools and working places should be made mandatory by law.14:20
de-factoI am against making vaccinations mandatory, but i am for making tests on regular bi-weekly schedule mandatory without any exceptions, this would make a huge difference if enforced on large scale14:21
de-factosomehow also testing in households should be enforced, not sure how though14:23
BrainstormUpdates for Iran: +13836 cases (now 3.2 million), +127 deaths (now 84516) since 22 hours ago — Nepal: +1391 cases (now 642053), +34 deaths (now 9179) since 22 hours ago14:36
dTalde-facto, nothing has been enforced at all this pandemic14:55
dTalcept maybe in China14:56
de-factoNPIs, lockdowns, testing for participation, quarantine15:00
de-factoi think its extremely important to somehow achieve widespread and regular testing in all areas where citizens spend their time, be it school, work or household15:01
de-factothere is no health risk emerging from that at all, and now with tests available for under 1€ they should be used15:02
de-factoit really makes a big difference15:02
de-factoand since there will be some that oppose to that but still demand participation in society i think this should be made mandatory15:04
de-factoit literally takes a few minutes, i have done that many times already15:04
de-factoworst thing that happened to me from doing rapid tests was that it tickled my nose so i had to sneeze15:06
de-factobut there also are those tests where people just user their saliva (spit test), those are absolutely non-invasive and even smallest kids can easily do that without *any* possible harm15:07
* martini_man[m] uploaded an image: (322KiB) < https://libera.ems.host/_matrix/media/r0/download/nerdsin.space/a3c2488c85e768b17cad4ca39199eafe03c4d8fb/image.png >15:16
BrainstormNew from Francois Balloux: @BallouxFrancois: I would likely reach the same conclusion if my primary source of information about covid were @DrEricDing. → https://is.gd/gdLgD215:18
BrainstormUpdates for Switzerland: +158 cases (now 703334) since 23 hours ago — Germany: +1494 cases (now 3.7 million) since 23 hours ago15:38
BrainstormUpdates for Saudi Arabia: +2844 cases (now 490464), +29 deaths (now 7848) since 20 hours ago — Bangladesh: +8483 cases (now 930042), +132 deaths (now 14778) since a day ago — Canada: +8 deaths (now 26295) since 18 hours ago16:03
BrainstormNew from In The Pipeline: The Underside of the Aducanumab Approval: I would like to recommend this piece at Stat about the details of the Biogen aducanumab approval. It’s behind the paywall, but it’s a deeply reported piece from Adam Feuerstein, Matthew Herper, and Damian Garde about how in 2019 Biogen launched an effort to get their apparently [... want %more?] → https://is.gd/o2Qa3L16:43
BrainstormNew from Francois Balloux: @chrischirp: RT by @BallouxFrancois: Israel surely can't just let 1 million Pfizer vaccines go to waste... with a 3 week dose interval you could still vaccinate 500k people by end JulyIf the will was there, surely they could be donated to its neighbours or further afield. This is terrible. [... want %more?] → https://is.gd/UsK4g716:54
BrainstormNew from Retraction Watch: Journal retracts paper claiming two deaths from COVID-19 vaccination for every three prevented cases: Just days after adding an expression of concern to a paper published last week claiming that two people died from COVID-19 vaccinations for every three cases the vaccines prevented, the journal Vaccines has retracted the [... want %more?] → https://is.gd/keEfJZ17:15
BrainstormNew from EMA: What's new: News: Increased manufacturing capacity for COVID-19 Vaccine Janssen → https://is.gd/Z9XLWQ17:26
BrainstormNew from Medical Xpress: COVID pandemic on the rise again: The pandemic picked up speed again this week in all regions of the world except Latin America. → https://is.gd/Klf0CD17:36
BrainstormNew from LitCovid: (news): Infection control, prophylactic antibiotics, and testing for SARS-CoV-2 and PPE on German intensive care units: results from a national mixed methods survey. → https://is.gd/BxmD9Y17:47
BrainstormUpdates for United Kingdom: +30422 cases (now 4.9 million) since 22 hours ago18:07
LjLgenera, it's not quite intentional, the Matrix bridge malfunctioning, what's intentional is a "privacy feature" that tends to break it more often than it otherwise would, but there are generalized problems with it anyway. Krey probably couldn't see what you were typing back to him18:10
LjLJ%J did a serum neutralization study on the Indian variant, which they say did better than on the South African variant, and according to https://www.nejm.org/doi/full/10.1056/NEJMoa2101544 the South African variant has 81.7% efficacy against severe disease as opposed to 85.4% for the original variant so that would be pretty close. but still the one about the Indian variant is not a study on what happens to actual people18:18
-RSSBot[LjLmatrix- Recent Commits to links:master: Give J&amp;J vaccine its separate section ( https://github.com/ljl-covid/links/commit/e1ef65da9af9da89c8dafb387cd05dcf7fff718e )18:23
BrainstormNew from https://covid19.specops.network : ljl-covid: Give J&J vaccine its separate section → https://is.gd/hbT1Xe18:29
generain other news, is the bridge your bridge or the general matrix-libera bridge?18:31
LjLgeneral18:31
LjLi cannot provide a bridge that joins each user as a separate user, i'd get k-lined i no time18:32
-RSSBot[LjLmatrix- Recent Commits to links:master: Add J&amp;J/Janssen press release on Delta serum study and durability ( https://github.com/ljl-covid/links/commit/c1e73a1f046b9b32c0b4370f5c5d6b52fdc69ba8 )18:33
BrainstormNew from https://covid19.specops.network : Add J&J/Janssen press release on Delta serum study and durability: Courtesy imaginary. I need to find the actual bioXriv preprints mentioned by not linked to → https://is.gd/T8siJt18:40
-RSSBot[LjLmatrix- Recent Commits to links:master: Move misplaced J&amp;J press release ( https://github.com/ljl-covid/links/commit/5fad8d29d352ecffec408b87b69d50dd030d73d4 )18:43
-RSSBot[LjLmatrix- Recent Commits to links:master: Add &#34;durability of response&#34; part of J&amp;J press release ( https://github.com/ljl-covid/links/commit/96d94cbd6ace20f752b8fefeb5f1a63353b418b7 )18:48
-RSSBot[LjLmatrix- Recent Commits to links:master: Add J&amp;J preprint about Delta neutralization ( https://github.com/ljl-covid/links/commit/d08490eaef206ce00bdb8e73fca2ae98b53d8e34 )18:48
BrainstormNew from https://covid19.specops.network : ljl-covid: Add J&J preprint about Delta neutralization → https://is.gd/iNx0aC18:51
pwr22LjL: what's up with those funky permission changes?19:24
LjL-MatrixPeter: oh wow. I just restarted my bot a few times to solve an issue... but since it's voiced in the channel, every time it rejoins the bridge gives it the closest Matrix equivalent to voice, which is level 119:27
LjL-MatrixI've solved the issue so I likely won't be restarting it anymore for a while, if that helps ;P19:28
BrainstormUpdates for Italy: +794 cases (now 4.3 million), +28 deaths (now 127615) since a day ago19:37
pwr22Sure, I don't mind it anyhow just confused by it19:38
BrainstormNew from CIDRAP: News Scan for Jul 02, 2021: COVID-19 in sickle cell disease COVID risk for emergency responders Cyclospora prevention Polio in Nigeria Maine Powassan virus case → https://is.gd/hzZti919:55
de-factoi put my bots behind ZNC, so i even can connect multiple bots under one nick :D20:17
LjLde-facto, mine is under ZNC too, the problem was with ZNC :P20:20
LjLand it's three bots :P20:20
LjLspeaking of20:20
LjL%fdroid Covid Check20:20
BrainstormLjL: no application with that name was found!20:20
LjL%fdroid Covid certificate20:21
BrainstormLjL, COVID Certificate Check 1.2.0 (ch.admin.bag.covidcertificate.wallet) in https://f-droid.org/repo: Check COVID certificates - updated 2021-07-02, see https://github.com/admin-ch/CovidCertificate-App-Android/releases20:21
LjLthis is a couple of Swiss apps, they tell me my certificate is invalid due to invalid signature, but maybe they just need to update the signatures tomorrow20:21
LjLanyway if you're using F-Droid it's a neat enough app to keep digital copies of your certificates, if you don't want to use other countries' apps from Play20:21
LjL(not the "Check" one but the other one that lets you store one or multiple certificates)20:22
LjLright now there is a bit of a mess with these apps in F-Droid, one is really the other one, there's a bug filed at https://gitlab.com/fdroid/fdroidserver/-/merge_requests/98120:22
LjLbut anyway they work, you just have to download the "Check" app if you want the other one :P20:23
LjLthe only Swiss-specific thing it seems to do is check against the Swiss signature server (?) and tell you whether the certificate is valid for Switzerland (mine isn't, for example, because i got just one dose)20:23
LjLbut it doesn't matter if you are just using it to show your certificate to someone *else* checking it with their own app20:23
showmethewaveCDC does not recommend aspiration during intramuscular application of vaccines [18]. However, in the case of adenovirus-based vaccines, aspiration prior to injection could offer a simple preventive measure against TTS20:33
de-factohey n :)20:34
showmethewaveour data provide first experimental support for the potential sequence of events that could lead to TTS in some patients: Thrombocytopenia might be a result of accidental intravenous vaccine injection with ensuing platelet-adenovirus aggregation, which in turn triggers platelet activation and subsequent splenic clearance20:34
showmethewaveluckily i just recommended asking ASS for a relative who just got her jab20:35
showmethewavepfizer though, but who knows maybe theres some risk too20:36
showmethewavehttps://www.biorxiv.org/content/10.1101/2021.06.29.450356v1.full20:36
showmethewave.title20:36
Brainstormshowmethewave: From www.biorxiv.org: Thrombocytopenia and splenic platelet directed immune responses after intravenous ChAdOx1 nCov-19 administration | bioRxiv20:36
showmethewavedid EU just reached its low point for cases this summer? signs that its going up now20:38
showmethewavewe had the low point around 15th june because early removing of bar, event and travelling restrictions20:38
LjLand also likely because Delta is now rising, and possibly because of that paper that says seasonally, July 1 is the low point anyway20:39
showmethewavebtw, how was it the median time from infection to hospital admission? i remember around 9-10 days, but was it from infection or testing positive?20:39
LjLso yeah there are a few reasons why they may be going up now20:39
showmethewavemight be different with indian variant, tho20:39
BrainstormUpdates for South Africa: +24270 cases (now 2.0 million), +303 deaths (now 61332) since 23 hours ago — Morocco: +844 cases (now 532994), +9 deaths (now 9307) since 23 hours ago — Spain: +12563 cases (now 3.8 million), +28 deaths (now 80911) since 23 hours ago — Germany: +1368 cases (now 3.7 million) since 22 hours ago20:39
de-factoR-value in Germany in the rise, soon to pass 1 i guess20:39
LjLyeah i remember the same, but i don't remember details20:39
LjLperhaps from symptoms20:40
showmethewaveif R was clearly under 1 because of summer and all, if the restrictions, travelling and ppl behavior remains the same, it takes around 40-50% share to get it over 120:40
showmethewavethen theres around week delay from infection to testing positive, and reporting it. so its already higher probably when cases start to go up20:41
nixonixthose official R's use some formula which arent necessarily the same than whats really happening. like using hospital numbers etc - and young ppl dont show up in those usually20:42
de-facto.title https://www.epicentro.iss.it/en/coronavirus/sars-cov-2-analysis-of-deaths20:42
Brainstormde-facto: From www.epicentro.iss.it: Characteristics of COVID-19 patients dying in Italy20:42
nixonixand it always starts with travelling, which is young dominant but older too (young go more bars etc), then community spreading is among 18-35 mostly at first20:43
LjLuhm the EU as a whole is going *sharply* up, much more than Germany20:43
LjLhttp://offloop.net/covid19/?default=EU;Germany&cumulative=no&smooth=yes20:43
LjLdo you know which country(es) are responsible?20:43
pwr22Cases and / or deaths?20:43
de-factonixonix its the quotient of two rolling averages delayed by serial time defined at ts = 4d, other may use ts=5.2d20:43
nixonixlike the last summer, it took 4-8 weeks in europe after cases started to rise fast, that to show up in deaths curve20:43
nixonixbecause those young first infect middle age parents and other older ppl, who then infect their old parents20:44
de-factoLjL, wait for it, in Germany R(B.1.617.2) ~ 1.3 too, hence doubling each 11d20:44
pwr22Lol, the uk has more cases per day than the whole of the EU 🤦‍♂️20:45
de-factoits just about to become visible20:45
nixonixanyways, it looks like reduced testing lately, so look closely the positive share rising for signs20:45
de-factounfortunately we are no exception, just our stupid politicians did not realize yet20:45
LjLde-facto, it's already kinda visible in offloop although offloop is a bit affected by its averaging towards the end20:45
nixonixif they release them20:45
LjLpwr22, yeah... but low deaths... i don't know what to think of it20:45
nixonixeu curve for deaths was rising a bit. might be just variance20:46
de-factoit will rise again, of course, vaccinations just change the ratio between cases and fatalities, but the factor is not zero20:46
LjLoh Spain is definitely going up20:47
de-factodang why is EU curve rising *that* sharply20:47
nixonixim most worried about unvaccinated kids getting permanent damage, brain, telomeres and who knows what else20:47
nixonixthose adults that dont want vaccine - their own fault20:47
de-factoits sharper than any country i have seen yet20:47
LjLde-facto, check Spain20:47
LjLalthough Spain looks much more dramatic with smoothing *on* than off20:47
de-factoyes dang Spain got a super steep rise there20:48
de-factodid they had some soccer matches superspreads or such?20:48
nixonixput them in half logaritmic scale. sure small rising could be just variance, we'll now in about a week20:48
nixonix+h20:49
de-factodangit all the EU countries got that kink there, on logscale20:49
de-factothis is Delta20:49
nixonixi read also belgian soccer fans imported indian variant from russia20:49
nixonixbut prob nobody else as much as us20:49
de-factojust exactly how i predicted, begin to mid of july delta will make incidence rise again20:50
de-factogermany just is a bit behind20:50
de-factoi think we need NPIs immediately right NOW20:51
de-factobecause later they will be exponentially more expensive20:51
de-factoR~1.3 is not tolerable at all20:51
nixonixcouple weeks earlier than last summer, when its mostly from mid july in western europe. faster in balkan, because they were efficient with hard measures on spring 2020, had not much cases, lifted restrictions and forgot about the epidemic20:51
nixonixwhen it *was20:51
nixonixhere because of stricter travelling restrictions last summer, had the rise starting by the end of july. now it was mid june20:52
ArsaneritHow many deaths are caused by Euro 2020?20:52
nixonixhappy go lucky20:52
de-factoEU got R~1-3 Spain even R~1.820:52
de-factoEU got R~1.3 Spain even R~1.820:52
nixonix90 million?20:52
nixonix.title https://www.nbcboston.com/news/coronavirus/biogen-conference-in-boston-now-tied-to-more-than-300000-coronavirus-cases/2254941/20:52
Brainstormnixonix: From www.nbcboston.com: Biogen Conference in Boston Linked to More Than 300,000 COVID-19 Cases, Science Journal Study Suggests – NBC Boston20:52
Arsaneritnixonix: how would they tell some of those people wouldn't have gotten covid via another path otherwise?20:53
nixonixdudes, where can i see restrictions for all the possible european countries easily? bars, nighclubs, events etc, the high risk businesses (not interested in closed barbershops and stuff...)20:54
ArsaneritI think reopen.europa.eu only has quite limited information20:54
ArsaneritI don't think you'll find that info nixonix... in Germany such restrictions are per county (Landkreis)20:55
nixonixor tell me about your countries and those that you know about. bars open, early closure times or something still? evens allowed, outdoors, indoors?20:55
de-facto.title https://www.ecdc.europa.eu/en/cases-2019-ncov-eueea20:55
Brainstormde-facto: From www.ecdc.europa.eu: COVID-19 situation update for the EU/EEA, as of 2 July 202120:55
de-facto.title https://arxiv.org/abs/2106.11129 <-- Arsanerit this is a really good modeling for Germany, worth a look20:56
Brainstormde-facto: From arxiv.org: [2106.11129] The Effectiveness of Strategies to Contain SARS-CoV-2: Testing, Vaccinations, and NPIs20:56
nixonixwe have outdoor events mostly allowed, i think not in metropolian area yet, but elsewhere. still limited client numbers for indoor gatherings, movies etc, and slightly limited hours for bars for highest prevalence regions20:56
de-factoit shows that rapid testing was just about as effective as seasonality (both ~40% R reduction)20:56
nixonixthe problem is, they miss a lot, and ppl think they are rona free. those rapid tests20:57
nixonixthey should be used only when cases are high imo. cdc thought the same20:57
Arsaneritde-facto: ok, so that should continue in any case20:58
ArsaneritI don't like the nose-drilling though :(20:58
nixonixwhen we never had them high, we havent used them. some regions used some rapid tests that eu bought (using our money) and pushed to us20:58
ArsaneritWe have rapid tests at work.20:58
de-factoit makes a big difference20:59
de-factoi think i just will do it regularly 2x a week, each of them costs 80 cent here21:00
nixonixthe indian variant has flu like symptoms for some people, so they have been thinking they have some common cold or allergic symptoms, and didnt go to test before they were traced down or symptoms got worse21:01
nixonixand been moving around in bars etc21:01
nixonixalso an infectious disease doc claimed - and similar anecdotal on soccer forum - that many ppl have got symptoms and still negative pcr tests21:02
de-factowe really need much more strict NPIs, otherwise we need months long lockdowns soon21:02
nixonixand the indian variant would often show in tests later than symptoms21:02
de-factonow its still low incidence, hence the chance to control it early, it will me astronomically more cheap this way21:02
nixonixnot sure if i believe21:02
nixonixtravelling and bars, and indoor events ofc, are the key21:03
nixonixnot much else is needed if those are tight21:03
de-factoi think many are irritated by the data because they dont take into account that comparing Alpha with Delta also includes comparing a mostly non-vaccinated population with one where most risk group are vaccinated (at least once) and that Delta now spreads in the young rather than in the elderly21:04
BrainstormUpdates for Canada: +19 deaths (now 26306) since 23 hours ago21:04
de-factoso if people say things like Delta is 6x less fatal than Alpha it just shows they are not able to take all the circumstances into account21:04
de-factoi am pretty sure Delta is more severe than Alpha when comparing the exact same cohorts21:05
de-factoid think about 1.5-2x21:05
nixonixyeah, it looks less severe because its mostly among 18-30 yo now, here at least21:05
de-factoyes but Alpha would have been even less severe in those groups21:05
nixonixuk estimates were indian was 2x more severe than uk kent variant.  not sure if they have more recent info now21:06
de-factosounds about accurate though21:06
de-factowow RKI is using GitHUB now21:08
de-factohttps://github.com/robert-koch-institut21:08
de-factothats new21:09
nixonix.title https://www.eurekalert.org/pub_releases/2021-06/acop-crt062221.php21:09
Brainstormnixonix: From www.eurekalert.org: Case reports thrombocytopenia with thrombosis following COVID-19 mRNA vaccine | EurekAlert! Science News21:09
nixonix.title https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8103126/21:10
Brainstormnixonix: From www.ncbi.nlm.nih.gov: No evidence of TTS risk with Pfizer/BioNTech's COVID-19 vaccine21:10
nixonixuk has free lateral flow test from pharmacy, you get a pack of 20 or something free every 2 weeks21:12
nixonixyet they have cases going up rapidly21:12
generavom Wiegen wird die Sau nicht fett21:13
nixonixits the restrictions that count. you dont know what effect rapid tests do, when other measures are being done at the same time. without large study where all the possible NPI's are taken into account at the same time21:14
nixonixso its just speculation which one had effect, without above21:14
nixonixhopefully that 41 country study team does another one using the fall and winter data21:15
generait still is a different time now that we have rapid tests for 89 cents21:15
Krey[m]Opinions on Delta plus variant ?21:17
nixonixalso when people do it themself, they dont scrape behind the brain like it should be done. meaning way more false negatives21:17
BrainstormNew from r/WorldNews: worldnews: Brazil top prosecutor to investigate Bolsonaro over COVID-19 vaccine deal → https://is.gd/MJJNJz21:18
nixonixppl have an exposure situtation or symptoms, so instead of going to proper PCR test they do that rapid test. it gives them a false negative, and they think its just a cold. ok, ill do another one in the evening, perhaps...21:21
nixonixso theres that same old efficiency vs effectiveness problem. it might be decent in a lab, but not among population and real life21:22
de-facto.title https://imgur.com/a/c9Vh3by https://i.imgur.com/wL2PzsA.png src: https://github.com/robert-koch-institut/SARS-CoV-2-Nowcasting_und_-R-Schaetzung/blob/main/Nowcast_R_aktuell.csv21:22
Brainstormde-facto: From imgur.com: COVID Germany: Infections and Reproduction - Album on Imgur21:23
de-factodangit look at the sharp rise in R-value at the tail21:23
de-factopretty sure we are close to minimum (R~1) in Germany21:25
de-factohence Delta peak just about to become visible21:25
BrainstormNew from FDA Press Releases: FDA: Coronavirus (COVID-19) Update: July 2, 2021 → https://is.gd/Crk4jf21:29
BrainstormUpdates for Algeria: +475 cases (now 140550), +9 deaths (now 3735) since 21 hours ago — France: +38 deaths (now 111183) since 18 hours ago21:29
-RSSBot[LjLmatrix- Recent Commits to links:master: Add UK vaccine surveillance reports page ( https://github.com/ljl-covid/links/commit/cea302252a5586765ce451f477333d1dfacd8de6 )21:33
de-factobut what is it in Spain, Delta taking over from Portugal?21:36
-RSSBot[LjLmatrix- Recent Commits to links:master: Add preprint on UK vaccine effectiveness with B.1.617.2 ( https://github.com/ljl-covid/links/commit/15afe6aa94da4b9294ae01b53eb3fab8b152b2e9 )21:38
-RSSBot[LjLmatrix- Recent Commits to links:master: Add UK government variants surveillance page to Epidemiology ( https://github.com/ljl-covid/links/commit/279aee5b8b33ec577501508eb6ffd5b4568df8ef )21:38
BrainstormNew from https://covid19.specops.network : Add UK government variants surveillance page to Epidemiology: It may be out of place as it's the only link in Epidemiology that actually talks about variants, but it seems to me that's where it belongs. → https://is.gd/DARU7N21:39
nixonixel pais is a decent paper, google site:elpais.com for spanish info21:40
nixonixthey had high cases in catalonia awhile back21:40
nixonixbtw that scottish study showed a bit more reduced vacc effect on indian variant than the one from england21:43
nixonix.title https://www.thelancet.com/journals/lancet/article/PIIS0140-6736(21)01358-1/fulltext21:43
Brainstormnixonix: From www.thelancet.com: SARS-CoV-2 Delta VOC in Scotland: demographics, risk of hospital admission, and vaccine effectiveness - The Lancet21:43
LjLanother country where Delta is definitely taking hold, although I didn't check it earlier since I assumed the EU spike came from bigger countries: http://offloop.net/covid19/?default=Greece&cumulative=no&smooth=yes21:44
nixonixi wonder whats its prevalence in ireland21:44
de-factoit looks the same in every EU country R~1.3 meaning October like peak21:45
de-factojust that its in the middle of the summer, so seasonality will accelerate it from now on while vaccinations slow it down21:46
nixonixcould be variance partly. also the cases are lower in weekend and early week days, so they are higher around wed-sat or so21:46
de-factohence as long as incidence still is low it can be controlled somewhat cheaply with NPIs compared to when politicians hesitate and tolerate incidence to grow up to a "critical" value where they have no choice but to react with a strict lockdown21:47
nixonixor they just decide that old ppl are protected now, so no more restrictions21:47
de-factono variance there, its Delta, i did exponential fits on pure delta sequences, its got R~1.3 in Germany and in UK aswell21:48
nixonixlet our kids get brain damage and short telomeres... well, only a few of them have ever heard about those studies, tho21:48
de-factoso i assume when we see R~1.3 we can be pretty sure its Delta21:48
nixonix"we just didnt know!"21:48
de-factoVaccinations are too slow, we need NPIs immediately put in place21:49
nixonixi just searched finnish articles on that brain image study. i know there was one, but it was in a small web media of a political party. i found one more, it was behind paywall21:50
nixonixi think 0 about telomeres. i just checked with a media search that shows only the 2 last weeks, there was none21:50
nixonixi found a 2013 article in a paper inteneded for finnish md's, influenza associated to shortened telomeres21:52
nixonixnothing about telomeres in finnish media, related to rona21:54
nixonixand the "flu" article was about those with already shorter telomeres were more apt to get rhino 3921:55
nixonix.title https://jamanetwork.com/journals/jama/fullarticle/165352321:56
Brainstormnixonix: From jamanetwork.com: Association Between Telomere Length and Experimentally Induced Upper Respiratory Viral Infection in Healthy Adults | Hematology | JAMA | JAMA Network21:56
nixonix.title https://www.nejm.org/doi/10.1056/NEJMoa210213721:58
Brainstormnixonix: From www.nejm.org: Comparative Effectiveness of Aspirin Dosing in Cardiovascular Disease | NEJM21:58
BrainstormNew from CIDRAP: COVID-19 surges accelerate in Southeast Asia: Lisa Schnirring | News Editor | CIDRAP News Jul 02, 2021 "In those countries whose hospitals are filling up, they need vaccines and other health tools right now." → https://is.gd/Jte5Ul22:00
nixonixremember electrolytes (some ppl need potassium and sink too)22:02
nixonix.title https://pubmed.ncbi.nlm.nih.gov/33551489/22:02
Brainstormnixonix: From pubmed.ncbi.nlm.nih.gov: Magnesium and Vitamin D Deficiency as a Potential Cause of Immune Dysfunction, Cytokine Storm and Disseminated Intravascular Coagulation in covid-19 patients - PubMed22:02
nixonixand reduce table salt22:02
nixonixSkwiersky said the odds of death also were increased twofold for patients who did not have diabetes and whose glucose values exceeded 140 mg/dL. Additionally, these patients had a 3.5-fold raised odds of ICU admission and a 2.3-fold higher odds of intubation and of experiencing acute kidney injury22:04
nixonixhttps://www.eurekalert.org/pub_releases/2021-03/tes-hcp_1031621.php22:04
nixonix.title22:04
Brainstormnixonix: From www.eurekalert.org: Hospitalized COVID-19 patients fare worse when they have high blood sugar | EurekAlert! Science News22:04
nixonixsink=zinc22:05
nixonix"The American Journal of Clinical Nutrition warns that high amounts of refined sugars causes a release of inflammatory cytokines22:09
nixonix.title https://advances.sciencemag.org/content/6/16/eaaz7086.full22:10
Brainstormnixonix: From advances.sciencemag.org: O-GlcNAc transferase promotes influenza A virus–induced cytokine storm by targeting interferon regulatory factor–5 | Science Advances22:10
BrainstormNew from COVID19 Vaccine Tracker: Andy Becker: Altimmune Inc: AdCOVID → https://is.gd/bnKPpU22:10
nixonixThese results suggest that IRF5 is at least the major, if not the only, functional OGT target that promotes IAV-regulated cytokine storm22:12
nixonixstudied for covid too?22:12
nixonixi wonder whats the correlation of sugar intake and severity of covid. filtered out things like BMI22:16
nixonix.title https://www.studyfinds.org/brown-fat-protects-from-chronic-illnesses/22:19
Brainstormnixonix: From www.studyfinds.org: Brown fat may actually protect you from chronic conditions, including diabetes and heart failure - Study Finds22:19
nixonixhere there are other ideas, why elevated glucose levels would be a risk factor22:30
nixonix.title https://www.medrxiv.org/content/10.1101/2021.04.29.21256294v1.full22:30
Brainstormnixonix: From www.medrxiv.org: Elevated Blood Glucose Levels as a Primary Risk Factor for the Severity of COVID-19 | medRxiv22:30
de-factoofc sugar is pro-inflammatory, its know longtime22:30
nixonixyeah, but mechanisms are important too. they could be treated possibly. just telling ppl cut the sugar during the epidemic has only a limited effect22:34
nixonixmany ppl just dont do that even when their feet are going to get amputated. go see those grannies in hospitals22:35
nixonixi dont know if you could increase your brown fat somehow, like cutting sugar, without gene therapy, but there are drugs that can activate it22:36
nixonixthen those metabolic pathways like the one involving IRF5 could be targets perhaps22:40
BrainstormNew from Shane Crotty: @profshanecrotty: More robust evidence that breakthrough infections in vaccinated people are milder and less likely to transmit.A large and well done study. → https://is.gd/F3hTCA22:41
nixonix"From December 14, 2020, to April 10, 2021" - in usa, so mix of older 614g, uk kent, P.1, cali 452R etc22:46
nixonixbut not 617.2 - there was lots of breakthroughs among double vaccd, mostly pfizer, healthcare personnel in a finnish hospital22:47
nixonixOf the 42 infected staff members, 17 had received both vaccine doses and two the first dose. The other staff members were unvaccinated because they were either not part of the regular staff or not involved in patient care22:49
nixonixso it looks like a lot depends on viral dose. even with double vacc, try to keep it minimal22:49
nixonixwith 617.2 around, that is. or SA or braz variant etc22:50
nixonixIn 14 cases (63.6%), occupational infections occurred while using a surgical mask, and all infections originating from patients occurred while using a surgical mask or no mask at all. No occupational infections were found while using an FFP2/3 respirator22:52
nixonix.title http://ijomeh.eu/Sources-of-healthcare-workers-COVID-19-infections-and-related-safety-guidelines,132898,0,2.html22:53
Brainstormnixonix: From ijomeh.eu: Sources of healthcare workers’ COVID‑19 infections and related safety guidelines22:53
nixonixbad masks create wrong sense of security, while making hearing the speech harder, with no lip reading thats part of the process, and recuires to rise the voice, reducing distance etc22:54
nixonix.title https://www.bbc.com/news/health-5763636022:55
Brainstormnixonix: From www.bbc.com: Covid: Masks upgrade cuts infection risk, research finds - BBC News22:55
nixonixraise..22:55
LjLI wonder if FFP3 there is just because "why not" since the article doesn't in any way compare FFP2 to FFP323:00
nixonix.title https://link.springer.com/article/10.1007/s40278-021-97804-123:04
Brainstormnixonix: From link.springer.com: PRAC June 2021 meeting highlights: COVID-19 vaccine AEs | SpringerLink23:04
nixonixthose certified FFP2 are prob pretty good, esp when professionals use them, getting the nose seal right. so not much bypass flow, like among common folks23:05
nixonixtheres your JAK inhibitor (mentioned in that EMA review article, for possible signals for cardiovasc events and cancer):23:11
nixonixXELJANZ (tofacitinib) is the first and only pill of its kind (JAK inhibitor) that treats adults with moderate to severe rheumatoid arthritis, active psoriatic arthritis, and moderate to severe ulcerative colitis23:11
nixonix(if real, or even too common, doesnt mean other JAKi would have similar risks)23:12
BrainstormNew from r/WorldNews: worldnews: Saline water administered instead of vaccine in Mumbai, India → https://is.gd/u2ZxPv23:13
nixonix.title https://www.themoscowtimes.com/2021/06/25/russian-vaccine-skeptics-rush-to-buy-fake-covid-jab-certificates-a7434823:16
Brainstormnixonix: From www.themoscowtimes.com: Russian Vaccine Skeptics Rush to Buy Fake Covid Jab Certificates - The Moscow Times23:16
nixonixAt the low end of the black market, Russians can get a paper booklet certifying they were vaccinated for 2,000 rubles ($28, 23 euros). At the top end, for 30,000 rubles ($400, 350 euros) middlemen say they can get a medical worker to pour out vaccine doses and upload falsified medical records to the government portal23:17
nixonixit looks like russia is now suffering from blacklash, after their anti-inovio, anti-az, and later anti-pfizer and mrna vacc campaigns. now russians dont trust in their own vaccines23:20
nixonixA troubled public relations campaign is to blame for Russians’ distrust of vaccines, said Pavel Volchkov, the head of the Genome Engineering Lab at the Moscow Institute of Physics and Technology.23:22
nixonixHe pointed to Russian state television channels highlighting extremely rare adverse reactions for some individuals abroad who received AstraZeneca and Pfizer-BioNTech vaccines. Though those vaccines are not available in Russia, the news reporting contributed to a fear of all vaccines, he said23:22
BrainstormNew from Reddit (test): nCoV: Scientists quit journal board, protesting ‘grossly irresponsible’ study claiming COVID-19 vaccines kill | 01JUL21 → https://is.gd/2KO2KN23:23
nixonix.title https://www.themoscowtimes.com/2021/03/24/trial-subjects-for-russias-second-coronavirus-vaccine-urge-probe-into-effectiveness-a7335123:24
Brainstormnixonix: From www.themoscowtimes.com: Trial Subjects For Russia's Second Coronavirus Vaccine Urge Probe Into Effectiveness - The Moscow Times23:24
nixonixTheir analysis of 116 members of the Phase 3 clinical trials, which were launched in mid-November, shows 52 failed to develop antibodies. Given that only 25% of the total 3,000 participants in the trial were given a placebo, the group calculated the likelihood that all 52 in their independent analysis were in the placebo group — and thus would23:25
nixonixnot be expected to produce antibodies — at just one in 333,00023:25
dTalUK vaccine acceptance is incredibly high, internationally speaking23:25
dTalI wonder why that is23:25
nixonixyeah, its higher than in spain for covid vacc. spain used to be among the top pre sars223:25
nixonixits because the uk press has been very... supportive for even the home made az. no critical words23:26
nixonixand maybe less antivaxers there, idk23:27
nixonixbut in israel, for over 16 yo 2 dose is over 80% and 1st dose over 85%23:28
nixonixthey just started to vacc 12-15, with less popularity when cases used to be very low and press writing about myocarditis23:28
nixonixand with large share of arabs and ultras in israel, who are less willing to take the jab, those percentages are superb23:30
nixonix.title https://www.usnews.com/news/health-news/articles/2021-06-25/99-of-new-us-covid-hospitalizations-deaths-occurring-among-the-unvaccinated23:33
Brainstormnixonix: From www.usnews.com: 99% of New U.S. COVID Hospitalizations, Deaths Occurring Among the Unvaccinated | Health News | US News23:33
nixonixits the intermediate state when the vaccine coverage is still increasing. when its 100%, it will be the other way around - all of them died and in hospitals will be vaccinated!23:35
nixonixso antivaxers getting the last laugh?23:35
BrainstormUpdates for Zimbabwe: +1442 cases (now 52663), +33 deaths (now 1841) since 23 hours ago — Canada: +25 deaths (now 26312) since 21 hours ago23:39
dTalyou know what I find really weird23:56
dTalwhen you plot "confirmed infections per capita per day" for different countries on a log scale, a lot of them have the same distinctive shape23:57
dTalbut, highly displaced in time23:57
dTali.e. some countries do it twice as fast as others23:58

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