libera/##covid-19/ Monday, 2022-02-07

TuvixWhat I'm really driving at is that, while there almost sure _is_ a protective factor from multiple infections, there are so many unknowns that it's not really a good reason to avoid getting vaccinated.00:00
xxI don't actually know if the current antibody blood tests are able to find how many different variants a person was exposed to. I don't think they are doing that yet.00:00
TuvixSo it really still boils down to the individual choice to reduce your risk, or continue to decline the vaccines despite the very likely odds it's improving your outcomes; how much improvement? That depends on a lot of complex factors, but still an improvement.00:01
TuvixLower improvement has been true in another important group just lookin at vaccines alone: the immunocompromised. Obviously they're still better off getting vaccinated, but it's less effective for that group than for the healthy.00:01
de-factoinfection severity will also correlate with the magnitude of immune protection resulting from recovering from that, so a mild sore throat may be quite different than a pneumonia or multi organ involvement in terms of immunity (magnitude and variety)00:02
TuvixAh, true, so now it's not just "were you infected" but "how much protection did your infection really confer"00:02
Tuvix(and that's yet-harder to evaluate/study, and virtually impossible for a fully-recovered patient)00:03
de-factovaccination manages to generate quite a reliable level of immunity (e.g. antibody levels do not spread as far as with infections)00:03
TuvixI hardly think the vaccine-declining population were racing out to get high-quality tests and lab results…00:03
TuvixYup, vaccines are carefully dosed, so you know exactly what you delivered.00:03
de-factothat of course makes sense given that an infection is self-replicating (by the virions) while a vaccination is a tightly controlled dose that does not self replicate00:04
TuvixThat afternoon at the bar you got infected (or more likely, several dozen of them) is not so clinically-dosed :P00:04
TuvixThe growing number of illnesses made worse by having COVID is concerning too. I finally read a few bookmarks I'd forgotten about and one of them was discussing the impact on hospitalized children in Utah's healthcare & ICUs.00:06
TuvixOmicron actually provided infants worse outcomes per-capita for any age-group under 65, seemingly a factor of lack of vaccines or low vaccine uptake combined with the amount of existing conditions made worse.00:07
BrainstormUpdates for India: +86579 cases, +897 deaths since 22 hours ago — Netherlands: +95052 cases since 22 hours ago — Germany: +34 deaths since 16 hours ago00:07
TuvixSome of those conditions were never a problem for that child before; one of the patients discussed in the SLT Trib article never had any breathing problems before, but required a hospital visit and ventalation as a result of having COVID.00:07
TuvixPretty sure I got this from the bot, but here's the under-5 news article: https://www.sltrib.com/news/2022/01/21/utahs-covid00:08
KlindaI am reading that the virus can cause alzhaimer00:08
Klindahow is that true?00:08
TuvixCOVID seems to be causing problems with a number of conditions that may have existed in a patient but not necessarily at a level to pose significant problems, like I was discussing above.00:09
TuvixWe know there's some interaction with the brain thanks to some studies (the UK Biobank brian imaging study was an excellent demonstration of that.) However, the mechanism is still not largely understood.00:09
Klindawhy the body can't recover from that damage00:10
Klindais that stupid or what?00:10
TuvixFor instance, the loss of smell certainly suggests there's some connection with the brain, but we don't understand why fully.00:10
Klindaif you have some cold is normal to lose some smell00:10
Klindabut you recover from it00:10
Klindawith this virus no.. seems more time needed00:11
TuvixThe human immune system is pretty impressive, but it's got limits. The body can't fight off most forms of cancers either, which is why we have to apply pretty invasive mitations such as surgical removal or very toxic chemicals that have lots of unwanted side-effects.00:11
TuvixAnd sure, many people do recover from COVID seeminly fully and in a fairly short time frame of perhaps just a week or two. Others end up with long-covid symptoms months after their infection.00:12
Klindathe body can handle smoke, alchool, drugs, "flu" and some other things00:12
TuvixWell, those can also all cause major damage. A recent report on alcohol has indicated that there is no safe level of alcohol for the heart, for instance.00:13
TuvixWe of course know the dangers of smoke in long-term impacts on the respiratory system. The body most certainly cannot recover from damage like cronic smoking, and it'll stay with a patient for life.00:13
Klindabut he still can reach 80+ years old00:14
Klindathat's enough00:14
Klindahow a virus can damage very badly one00:14
Klindaand these "known" stuffs no00:14
TuvixCareful about using case studies and treating it as a rule.00:14
TuvixSome people have been brought back to life after 10 minutes of no oxygen too, but this hardly means that it's "safe" to deprive yourself of air for that long.00:14
TuvixSame with COVID; repeat exposure certainly is not a 'good' thing. The immune system may improve with repeat exposures, but the side-effects are far, far worse than vaccination if the goal is immune-protection. The cost/benefit tradeoff of intentionally getting infected is very bad.00:16
KlindaI mean if you take a pneuomonia is normal that you don't recover soon, and maybe will ahve a sign of it forever.. but still the body want to fix it..00:16
TuvixIt just doesn't work that way in aggregate for any damage the body has. Think of it like a computer virus; sometimes you can remove just the virus, but other times it's so deeply burried that you effectively have to wipe the whole system to remove it.00:16
TuvixPerhaps with enough skill and knowledge of the specific virus we could do a more targeted approach, but just like with the human immune system, sometimes you don't have all the data you need to make that evaluation.00:17
Klindafor me is like terrorists saying yes it causes alzheimer00:17
Klindayou make only the pepole feel depressed and so on00:17
LjLhttps://www.alz.org/aaic/releases_2021/covid-19-cognitive-impact.asp00:18
* LjL terrorizes around00:18
hirogenanyone know if ppl in their early 40s say 3 to 5 months after taking the 2nd jab start experiencing issues in working out and cardio where they don't want to or cant seem to really push it hard as they used too, like I used to do these super sprints and really I'd kill myself at the final 5 seconds up a hill or say I'd go 9 to 10 rounds on a bag and try to smash the shit out of it really00:19
hirogensmashing the cardio to teh highest level and weight lifting I'd try to just always max out if I could now I can't seem to00:19
hirogenyet I'll still train 4 to 5x a week kcikboxing, boxing, weight lfiting, cardio, kettbleels, all sorts really but i just dont quite push myself over the edge anymore00:19
TuvixSide-effects from heart-related strain, although rare, when present generally appear to improve over the course of 1 to 4 weeks, and are more common in the uner-30 group than older groups.00:20
KlindaI experienced a difficult on walking in my first jab00:21
TuvixNow, with just 2 doses, protection against the current varient is likely not as great, so it's also possible a viral infection could also be responsible. That's true also for the 3-dose recipients, though outcomes are a lot better past the 5 or 6 month point.00:21
KlindaI couldn't walk like before..00:21
Klindabut then after some days it were normal00:22
TuvixThat depends a bit on when you got vaccinated, but by your 3-5 month comment, I take it you're at least 5 months past your 2nd dose? The protection against Omicron in that case is much lower than with a 3rd mRNA dose. Specifically the protection against side-effects.00:22
Klindamy mom with 3 jab got it anyway and same symptoms as me, but she were way older00:22
Klindayes Tuvix but I was telling in my first jab in the end of july00:23
TuvixMy timing comment was regarding th eoriginal question, not your comment.00:24
TuvixHence my specifically referring to the 3 to 5 months timeline.00:24
TuvixMy own experience with the 3rd dose (all 3 Pfizer here) was almost no side-effects at all, besides a mildly sore arm at the injection site as common with many intra-muscular vaccines. While I had only mild side-effects from my first 2, the 3rd was far less impact.00:27
hirogeni had no issues or side effects taking my jab00:27
TuvixOverall I think that's fairly common, but everyone's body reacts a bit differently.00:27
hirogeni just noticed I dont kill myself in the gym cardio wise that is00:27
Klindabtw for me saying covid 19 damage your heart, your lungs, your brain and all in the long term, seems like a terrorist thing, also if it's true, you don't need to publish article about it, maybe for only 10% of the cases is like that and you can't prove that is a real thing00:27
KlindaI found a study of 49 pepole that covid damge your heart00:28
Klindadid you see it??00:28
KlindaI mean if so also smog and other stuffs damage you, but you don't see it in every article they write00:29
LjLmaybe that's because you don't read every article about smog00:30
LjLthat COVID papers end up in the media more than other things only seems natural during a pandemic00:30
LjLyou don't have to read it :P00:30
LjLCOVID causing damage to the heart is a definite concern in the medical community00:31
hirogenI can imagine it does some damage loads of ppl got long covid esp vegans, unfit ppl , certain age groups, even slim ppl00:32
xxvegans?00:32
hirogenoh come on vegan food compared to veggie food00:32
Tuvixhirogen: Which vaccine did you take?00:33
hirogennothing normal about that diet00:33
xxhirogen: like, apples?00:33
hirogenphizer00:33
Klindaathlete heart is not a good heart00:33
Klindaor at least is what my medic said to me00:33
KlindaxD00:33
hirogenmind you the person who got it mid 20's is highly stressed prone to crying easily00:33
hirogenreally00:33
hirogenso dont over train?00:33
hirogencardio 2x a week isn't so bad though?00:33
Klindasometimes is good00:34
Klindayes00:34
xxit's better to be over train than under train I guess00:34
KlindaI go out and walk fast for one hour for example00:34
Tuvixhirogen: Okay, if you do end up opting for a booster for its significantly beter protection and statistical outcomes, you may want to continue with Pfizer. While the risk is indeed very low for even short-term (acute) heart imflamation, it's ever so slightly raised with Moderna. As a result, I'd suggest your possible 3rd dose also be Pfizer is that's a possible concern, though talk to your doctor for00:35
BrainstormNew from ##covid-19 Zotero group: Nervous system consequences of COVID-19: Type Journal Article Author Serena Spudich Author Avindra Nath URL https://www.science.org/doi/abs/10.1126/science.abm2052 Rights Copyright © 2022 The Authors, some rights reserved; exclusive licensee American Association for the Advancement [... want %more?] → https://www.zotero.org/groups/covid_links/items/VJ4CXPXK00:35
Tuvixdetails about your case.00:35
TuvixI do a fair bit out outdoor cardio myself in a somewhat rugged trail system near my home. Just a week after my 2nd dose I was doing 3-6 km runs. But as I mentioned before, everone's body is slightly different.00:35
TuvixThis said, I'd find it odd for a symptom like that to manifest months _after_ the vaccine; nearly all the side-effects I've seen in the medical literature are notably acute after vaccination, and the overwhelming majority of those clear up in a few weeks, if not much sooner.00:36
Klindabtw you will never see an article about "the vaccine caused this"00:37
Klindabut only "covid caused this"00:37
TuvixIt might be worth talking to a doctor if this is a new symptom that appeared months after vaccination, and since it may be completely unrelated given the timeline, a professional opinion is really the best bet.00:37
TuvixKlinda: Not true at all. We actually know the vaccine has demonstrated side-effects, and this is discussed very openly in the public review of vaccine approvals. We *know* the vaccines are not side-effect-free.00:38
TuvixThe real question though is if the side-effects are considered safe for use by the public (as much as any drug or treatment needs to be) and that the risks of the treatment are lower than the risks involved in not taking it.00:38
TuvixEvery perscription a doctor gives you uses the same approach, and realistically, so should any medication you take which isn't perscribed, such as Asprin or NASIDs.00:39
TuvixI'm actually not a fan of even mild pain-killers, but I do take them when the impact on my health will benefit from them. If I've injured myself, treated my wounds, but would have a hard time sleeping or doing necessary tasks during the day, pain-killers are an overall benefit.00:40
TuvixI do not reacah for pain killers when I've suffered a minor injury (a not-uncommon occurance with cats, I'll note)00:41
KlindaI always take meds when it's really needed, for me also having a fever it's not a problem, so I could save my parcentamol when having covid00:41
Klindabut my mom said take it, and i did00:41
BrainstormNew from ##covid-19 Zotero group: Β-Amyloid Deposits in Young COVID Patients: Type Report Author C. Harker Rhodes Author David S. Priemer Author Esma Karlovich Author Daniel P. Perl Author James Goldman URL https://papers.ssrn.com/abstract=4003213 Place Rochester, NY Date 2022-01-14 Accessed 2022-02-06 23:37:24 [... want %more?] → https://www.zotero.org/groups/covid_links/items/A7EG92HH00:44
KlindaTuvix: at least in the propaganda news you see more article about covid damage then vaccine damage...00:46
Klindato just convince you to vaccinate00:46
LjLmaybe there is more damage from COVID than from vaccines00:47
LjLjust a possibility00:47
TuvixA possibility supported by effectively the entire medical community, much like the theory of gravity is supported by all the evidence we have ammassed to date.00:48
TuvixBut, gravity too is "just a theory" after all. Be sure to bolt down anything you don't want to fly away if it turns out to be wrong ;)00:48
TuvixIf we consider death to be a pretty desirable level of damage to avoid, vaccines are clearly beneficial: https://ourworldindata.org/covid-deaths-by-vaccination00:50
Klindawhen you get the flu do you see articles about the damage it could do?00:50
TuvixSimilar trends exist for hospital admits, side-effects, and so on.00:50
TuvixFlu certainly causes damage too, up to and including deaths. These occur in much lower numbers and as a result are not as urgent a crisis.00:51
TuvixAnd at the same time, influenza vaccinations save a significant number of lives, especially in the older populations that are more at-risk from serious complications.00:51
Klindaso it's like if you get a flu you recover, you don't have any damage if you reach 100+ years old.00:52
TuvixRemember earlier how we talked about the body's immune system being more able to deal with certain things? The immune system is much better (but still no perfect) at dealing with influenza.00:52
LjL"covid is just a flu" was wrong on multiple levels two years ago, and it's still wrong now00:52
TuvixYou might have serious damge from influenza, and I'm sure some do. Some likely have worse outcomes, more complications, and earlier deaths.00:52
Klindawhy with covid is not posbbile to recover all and no damage ?00:52
LjLbut no, a flu can leave people with damage. even if they're not 100+. the fact is just that it doesn't for the vast majority, but ask a hospital doctor, and they'll tell you it's not always harmless00:52
LjLi'm really failing to see your point00:52
LjLare you arguing COVID somehow "can't" cause damage... because... some other diseases don't?00:53
TuvixStop using a single case-example of "but THAT guy made it to 100 years" as proof that your position is right. By that logic the fact that 36.9k people die annually from influenza in the US "proves" the point I'm making. It's a silly argument.00:53
LjL(even when they do, but whatever)00:53
LjLit is possible to recover with no damage with COVID. who said it is not "possible"? the thing is there is a much higher RATE of non-recovery00:53
Klindain this world not hurting by smething is not posible00:53
Klindabut are you thinking always on what can damage you?00:54
TuvixLiving is about risk mitigation. I often use the example that I could be killed crossing the road tomorrow, but I can vastly improve my odds crossing at a designated crosswalk and checking for traffic carefully before I enter the roadway.00:55
LjLi ask again: what is your point?00:55
LjLat the start of https://github.com/ljl-covid/links#questions is something that was written by now almost two years ago and honestly not often updated, to the point that it doesn't even mention Long COVID or other various types of long-term damage. and yet, there are already a few points on why it is "not a flu"00:55
LjLthose points are still valid, except with more added00:55
Klindaeverything you do in this world can get damage.. you have a life to live, get vaccinate, do your best for not taking the virus and that's it00:57
LjLokay, in that case, why are you here?00:57
LjLthis channel is basically about fixating on COVID00:57
LjLwhich is perhaps a wrong attitude to take? yes, indeed, it might be, and if someone gets anxious by being here, and prefers to leave, that may be a good idea for them00:58
LjLbut COVID is a serious threat and unfortunately remains pretty serious despite vaccines, so if you're suggesting that "that's it" means we should cough on the bus without a mask on, *no*00:58
LjLif you're suggesting we shouldn't panic over the possibility of long-term heart damage if we get COVID... well, then you're right, panic doesn't help (but knowledge may help)00:59
Klindaif the long covid is really true we the states are not doing some screening of it?01:02
Klindasaying to all the world "hey we understand that covid can cause this and this, come here and see if you are suffering from it"01:03
Klindabut they just let you discover it alone, maybe when it's too late or something01:04
TuvixIn this case, screaning really involves application of already existing healthcare mitigations. Patients who have a medical issue or concern need to inform their doctors, and they in turn evaluate patients.01:04
LjLit won't be "too late" yet because we don't know how to treat it anyway. we're just discovering things about it. but some countries *do* have screening programs for it.01:04
pwr22<LjL> "this channel is basically..." <- I don't really see the room as being exclusive to people who identify as fixating on covid 😛01:05
LjL%title https://www.phosp.org/01:05
BrainstormLjL: From www.phosp.org: PHOSP01:05
Klindaso the state just want you to get the vaccine so you don't get the hospital crowded so others can't get medication01:05
Klindathey don't really want you to take it01:05
LjLpwr22, you're allowed to fixate on other things (like Matrix servers) while you aren't fixating on COVID01:05
Klindathey don't really make you safe from it01:05
LjLKlinda, okay that's enough01:06
LjLyou are not evne making sense01:06
LjLyou're saying at the same time01:06
LjL1) they want you to get the vaccine SO YOU DON'T END UP IN HOSPITAL01:06
LjL2) but the vaccine doesn't make you safe from it01:06
LjL?!01:06
LjLcertainly i would prefer not to end up in hospital01:06
LjLand so would most sane people01:06
LjLand many insane ones01:06
pwr22LjL: Ah, that's good 😛01:08
Klindathe state only want you to be dead now, but be dead later from the damage of when you get the covid01:09
Klinda*not be dead01:09
Klindaif it's all true, what articles say01:09
TuvixThere's good evidence vaccines reduce long-term impact from the disease; some patients with long-covid symptoms even reported a reduction of their symptoms after vaccination.01:11
TuvixDo keep in mind that we're only 2 years into our understanding of this disease, and still not even 1 year into widely-available vaccines.01:11
KlindaI mean if it's really a bad things, a world lockdown should be planned, if they really care to us..01:12
Klindabut here one state say "all free the pandemic is done"01:12
Klindaand so on01:12
Klindaso we don't really want to fix this problem01:12
TuvixExcept that action also has very severe side-effects, including on the economy and well-being of its citizens.01:12
BrainstormNew from r/Science: science: School closures during the 1918 Flu Pandemic "had no detectable impact on children's school attendance in 1920, nor on their educational attainment and adult labor market outcomes in 1940." → https://old.reddit.com/r/science/comments/smb97l/school_closures_during_the_1918_flu_pandemic_had/01:13
Klindamaybe if it's all true we want to get less expentacy of life for just economics and so on01:13
TuvixIf you think of a strict lockdown in terms of a medical intervention, you also have to consider the unintended consequences that'll cause. A recent NY Times article discussed this exact issue, pointing out that social reduction measures require a balanced approach and acceptance by the public.01:13
LjLKlinda, many people here have said for a long time (or at least initially) that a serious "world lockdown" should have been done. it hasn't been done for many reasons, but jumping from there to thinking that it wasn't done *because they want us to die* is a little bit much01:15
LjLand just to clarify: are you saying that they want us to take the vaccine so that we die now, because otherwise we'd die later with long COVID damage?01:15
pwr22Why do they want us to die? What is the benefit and does it offset the costs covid has brought?01:18
KlindaI am saying that they want us to not make the hospital full, so you get the vaccine, they never mention that long covid exist, that this virus will damage permanently some organs and so on, because if it's the case... I think they don't really care about the lifespan of us01:19
LjLit's not true they never mention it though01:20
LjLif you think long COVID has never been mentioned in the media, you have followed all the wrong media01:20
TuvixThe CDC has a lost of over a dozen new or ongoing symptoms that can result from COVID: https://www.cdc.gov/coronavirus/2019-ncov/long-term-effects/index.html01:20
Tuvixhas a list*01:20
LjLbecause on the one hand you say the media keep scaring us about things... then you claim they don't mention long COVID?!01:20
LjLthe possibility of COVID accelerating or even initiating Alzheimer's *is* something falling under the umbrella of long COVID01:21
LjLso your entire premise... i don't even know01:21
Klindawell imagine if I go the doctor now saying, what can I do if covid damaged my organs ?01:21
Klindawhat is the answer?01:21
pwr22I can't make any sense of what you mean Klinda , sorry ☹️01:21
pwr22We get the vaccines so we tend to have less severe (or none at all) covid and that fill the hospital less01:22
pwr22What does that have to do with making us die right now and why does the state want that and also why don't they want hospitals full if they want deaths right now? Because one way to make deaths right now go up is to fill the hospital01:23
Klindayes but you can get damage also if you recovered from it, so the state don't really care if you take it or not, it just want to be sure you not get into hospital01:23
pwr22s/hospital/hospitals/01:23
pwr22It doesn't make any sense to me01:23
LjLKlinda, the answer is if the doctor is in some parts of the UK for example, they'll say "we can put you into this rehabilitation programme. You can't expect too much, unfortunately, because this problem is now. But fill this questionnaire, and with enough information from you and other patients, it may help us understand what the problems are, and how to deal with them".01:23
Klindaif it really wanted to do something about it more restrictions were needed, that's it01:23
pwr22That doesn't make sense either. The vaccines make damage less likely. And again, why do they care if we go into hospital or not?01:24
Klindabut now is more likely "hey it's all done, we are free now after the booster"01:24
Klindaif it's really something bad, they are just making wrong decisions01:25
LjLit is bad, but i don't think it's tenable to keep people locked inside for *years*. maybe if we had done it better (and worldwide) for a month or two in 2020...01:26
LjLinstead of, you know, "walking the dog" even if we don't have a dog, and things like that...01:26
LjLi think governments have a lot to be blamed for. *but* so do individuals.01:26
TuvixAt the time we also didn't know how bad it was going to get. The irony is that if we did know back then, we might have taken more strict measures despite the impact on society.01:26
TuvixBut once it got bad enough that it became clear what was happening, it was really too late for any practical limiations on movement to do any good.01:27
LjLTuvix, i'm not sure. at the time, we didn't know about long COVID, but we thought (correctly, for that matter) that the fatality rate was much higher than it is now01:27
LjLif you mean limitations to international movement, i think many countries could have realized what was happening sooner instead of just staring at China and being like "uuuuuuh well it won't come here, right?", then staring at Italy and being like "uuuuuuh well it won't come here, right?", and so on01:28
pwr22Yes imo the science was largely ignored by politicians who have engaged in the practice of global epidemiological wishful thinking 😛01:28
LjLif you mean limitations to domestic movements as in lockdowns, well, in a few countries were the lockdowns were really rigid and a zero covid objective was seriously pursued with contact tracing, it worked01:28
LjL... until it stopped working because they just had to stop doing it because it wasn't maintainable forever01:29
TuvixI think even with "very strict" international movement, it still would have found its way across oceans eventually.01:29
LjLTuvix, it repeatedly found its way back to China, or to New Zealand, but they also repeatedly squashed it01:29
TuvixAnd once the first case lands and is given a chance to spread, it's all over. Just a bit more slowly to take up than if dozens/hundreds of people bring it in across various parts of a country.01:29
xx"found its way" = we let it onto airplanes01:29
LjLwith Omicron they're sort of giving up, for a mixture of reasons01:29
Klindabut also I think now we have to live with the virus, they will not disappear01:30
Klindait*01:30
TuvixSure, looking at pre-Omicron mitigations countries in for example Oceania, they actually had some succes, although they doo had domestic outbreaks and very harsh lockdowns.01:30
TuvixWith Omicron they're getting it spread like everywhere else, but I think my point is really that it wasn't viable for every country to do what Australia & New Zealand did. It was technically-possible, yes, but not practical, IMO.01:31
TuvixLike that NYT article a day or two ago mentioned, you can't do more than the public is willing to put up with.01:31
Tuvix(unless you want your military to enact it. Again, not viable.)01:31
LjLTuvix, the lockdowns were harsh but somewhat limited in time. during periods when they had virtually zero cases, daily life went on pretty much as usual, while in Italy for instance, we were seldom really completely out of lockdown, it was always "from today on, you can take off masks but only outside and when other people are distant", "now you can go to other regions, but only with a test"... (kinda making the specific things up right now, but you understand01:32
LjLwhat i mean i hope)01:32
pwr22Yeah, it didn't help with the 1918 flu and things were even less global back then01:32
TuvixSure, I get your point too; I saw some videos of life in Australia in 2020-21 when they were largley maskles in malls shopping, eating, just doing normal things. US rules were similar to the Italian changes, but with a bunch of "guidelines" and "suggestions" that anyone was free to ignore.01:33
LjLTuvix, i think the key is they're not *getting* it spread like everywhere else, but they're *letting* it spread like everywhere else. they've made a conscious decision to give up the "zero COVID" policy because they have, realistically, realized that it is no longer tenable with Omicron, while it was tenable before. they weren't wrong before and right now, the situation changed.01:33
Klindais possibile that omicron cause long covid too?01:34
xxyes01:34
TuvixIt's more than possible; it's an almost certainty. Perhaps the percentages and types of impact may have changed ever so slightly, but it's still the same virus.01:34
TuvixJust a new variation, which is why they're called Varients of Concern.01:35
xxtalking of VoCs, the next one is delayed for some reason01:35
LjLwe really haven't had Omicron long enough to have statistics on how bad long COVID will be with it01:35
Klindabut they say it's much less deadly01:35
Klindaisn't a good hope?01:35
xxwe've had VoI -> VoC on a regular basis01:35
LjLyes, but it's still deadly. i am hopeful that long COVID will be less with Omicron, but i don't think it will *disappear*. and it's a hope, not knowledge.01:36
TuvixI'm very careful to discuss Omicron as less-deadly personally; per-case that is technically true, but somewhere like the US we may actually see Omicron kill more during the initial wave than Delta did.01:36
LjLxx, i think BA.2 has reason to concern me :P01:36
xxyeah, but they are choosing to view it as a type of omicron instead of giving it a new name, despite having sufficiently enough mutations01:37
TuvixIf you use a measure of how many people died during the initial surge and recovery of the varient in a given country, it may well be accurate to say that in the US at least, Omicron may turn out to be more deadly in impact.01:37
LjLalthough i don't remember where was last thing i read about BA.2. it said breakthrough was 3x compared to BA.1 after a booster, and 2.5x after 2 shots, which is not a good sign, at least if i remember right01:37
LjLxx, it has *fewer* mutations all in all, though, right?01:38
TuvixWasn't that only because some of the mutations in the earlier lineage wren't found in the latter one (plus some other changes in the genome)01:38
Tuvixie: more deletions than additions/changes.01:38
xxmaybe I said it wrong. The number of mutations in spike protein between original omicron and BA.2 is larger than between omicron and delta.01:39
LjLi'm not really sure Tuvix01:39
LjLxx, well that's interesting01:39
LjLwhy is it even considered a sublineage? the WHO may not give it "a greek letter" for its own reasons, but why is it just BA.2 in PANGO?01:39
xxI don't have an answer to that01:40
xxand that's what makes me wonder01:40
xxnot claiming any conspiracy, just finding it a weird deviation from how the naming was done before01:40
LjLit makes me wonder a bit too, but i can't say i know the specifics of BA.2 vs BA.1 (vs what we had before) to... any extent, so i'm basically just wondering vicariously01:41
LjLmaybe my own mental fatigue that has not made me curious enough to try to figure it out is also a collective mental fatigue that is not making researchers place it on the tree the way they'd have done before :P01:42
TuvixI'm really more interested at this point to hear practical implications and studies that focus on it. Call it by a cryptograph hash for all I care :P01:43
LjLand i'm only half joking, although that'd probably be just a different interpretation of a "they don't want us to react to yet another variant of concern" conspiracy theory...01:43
xxI still think they should have been selling the rights to name the variants01:43
LjLTuvix, well, i *am* also interested in how people, researchers, and governments react, because it's interesting and because it has itself a number of practical implications01:43
xxmake it an NFT or something01:44
LjLxx, i think Delta Airlines suing the WHO would be a nicely distracting shenanigan01:44
xxDelta Airlines will be fine if Corona Beer is still in business01:44
LjLheh01:44
LjLCorona beer was pretty pissed, though, if i may say so01:45
LjLbut they didn't really have anyone to sue01:45
TuvixCorona viruses were a thing before COVID-19 though. They just got unlucky that this one became so well-known.01:45
xxand that we keep commonly calling it 'corona' instead of SARS-2 or nCov or something else01:46
TuvixMaybe I should buy a case next time I'm shopping. It's not usually a drink I stock at home, although I only ever drank it in bars, and I haven't been to one of those in 7 months now.01:46
LjLi think i will sue... someone... for the RSI that typing SARS-CoV-2 (including the alternating capitals and hyphens) gave me over time01:46
LjLi'd have happily typed "COVID" but then someone would always be like "that's the disease not the virus" - i knooooooooow :P01:47
LjLthis channel was originally ##2019-ncov01:47
LjL(on freenode, of course)01:48
xxI like 'rona01:49
xxshort and easy to type01:49
xxcould have made if official01:50
TuvixNah, the headache to escape it in the places scientists use like formalized data and databases would have been beyond annoying01:50
xxheh true01:51
xxwell they could have named it 🦇rona01:51
TuvixUniversal support will come as soon as native-ipv6 does worldwide.01:52
TuvixErm, universal UTF-8 support that is01:52
LjLthere's seriously 🦇...01:56
xxon skype, it's even animated!01:57
xxhttps://emojipedia.org/bat/01:57
LjLUnicode has gone 🦇💩 insane01:57
xxheh01:57
TuvixPerhaps, but now I can express Omicron as Ο like it should be, not the non-Greek O. Thanks, UTF-8!01:58
LjLΤuvix, yep, and i can play tricks with people01:58
xxI'd prefer О01:59
LjLxx, nyet01:59
xxda01:59
BrainstormUpdates for Canada: +6845 cases, +85 deaths since 23 hours ago01:59
LjL/kick xx nyet01:59
xxheh01:59
xxwe'll run out of greek letters anyway01:59
LjLespecially if they keep skipping a bunch02:00
LjLhow many more world leaders are named like greek letters?02:00
xxdon't know, but a lot of them think themselves alpha02:01
LjLno good reason not to name it Nu anyway except people were like "hohohoh the 'nu' variant"02:01
xxwhen't the Eta on the Η variant?02:01
LjLmaybe some of them are even grandiose enough to think they are the Α-Ω?02:01
LjLeta isB.1.52502:02
xxit didn't gain sufficient notoriety to make the jokes about eta on eta02:03
xxBrainstorm has been very quiet with updates02:04
LjLxx, there wasn't enough delta t between delta and it02:04
LjLxx, i've killed worldnews :P02:04
xxI can see why :)02:04
LjLi am petty and revengeful02:05
LjLas if they care02:05
LjLas if they know02:05
LjLbut my rationalization is i don't want to contribute to an echo chamber of "only the news we like even though we pretend not"02:06
LjLthe numeric updates were also stalled for a couple of weeks, Covidly's fault, but they should all be back now02:06
TuvixIt was kind of annoying to click a link from the bot only to have it a half hour later removed from the reddit feed. I'd already read the actual article it was discussing, but that's not really useful in the channel's feed when it's an unreliable source of material.02:06
TuvixGranted this was not an overly common occurance, but the article itself in that case was quite factual, although I didn't like how they presented the story.02:06
LjLTuvix, uhm but you can usually still see the reddit thread if you have the link that Brainstorm posted, it just disappears from the subreddit02:07
TuvixAh, true, and I think that was the case, so my argument is less effective. I'll fall back on the lack of decent information due to the chilling effect by posters to the sub then!02:07
LjLstudy sayx 'x' → article says "study says 'x'" → headline person makes a headline saying "'x', study says" → redditor copypastes "'x', study says" into reddit → moderators go "misleading title"02:08
LjLanyway we still have news from r/Coronavirus and r/COVID19 as well as a bunch of other obscure subreddits sometimes02:08
LjLand i'm even banned from r/COVID19 so i've only killed 50% of the subreddits i'm banned from!02:08
LjLhttps://github.com/ljl-covid/links/blob/master/feeds.py has the current list of feeds, by the way, in case it was missed02:09
xxhttps://en.wikipedia.org/wiki/RaTG13#History02:11
xxwhy do we even let bats live...02:11
xx293 diverse coronaviruses from just one cave02:11
xxwhile humans only have 602:11
xx7, sorry02:12
LjLimagine the amount of infection from blood, corpses and everything if we went to chase every single bat and kill it02:12
* LjL doesn't agree with the idea regardless but trying to make it about relatable terms02:13
xxmaybe we could engineer a coronavirus that's more lethal and release it into the bat population?02:13
xxnothing could go wrong with that...02:13
LjLmaybe that's kind of what they were doing *cough*02:14
xxhonestly, wouldn't surprise me if they reveled that in 20 years that they were working on a way of killing corona-infected bats02:15
xxbats are nasty creatures02:16
LjLbats fly and somehow that implied a different balance in their immune system had to be reached02:16
LjLapparently02:16
BrainstormNew from ##covid-19 Zotero group: RaTG13: Type Encyclopedia Article URL https://en.wikipedia.org/w/index.php?title=&oldid=1066048039 Rights Creative Commons Attribution-ShareAlike License Date 2022-01-16T15:41:14Z Extra Page Version ID: 1066048039 Accessed 2022-02-07 01:15:40 Library Catalog Wikipedia Encyclopedia [... want %more?] → https://www.zotero.org/groups/covid_links/items/2D3DW65D02:20
BrainstormUpdates for Solomon Is.: +392 cases, +8 deaths since a day ago03:02
BrainstormNew from COVID on Twitter: Eric Topol (@EricTopol): South Korea is in the midst of a major Omicron new case surge, with 86% of its population 2-shot vaccinated, 54% boosted, and other mitigation efforts. Their suppression of severe disease outcomes to date is impressive pic.twitter.com/LA5kxJaEzZ → https://twitter.com/EricTopol/status/149050538149105664103:07
BrainstormUpdates for Netherlands: +87716 cases since 10 hours ago04:04
LjL%cases south korea04:08
BrainstormLjL: South Korea has had 1.0 million confirmed cases (2.0% of all people) and 6886 deaths (0.7% of cases; 1 in 7520 people) as of 4 minutes ago. 6.7 million tests were done (15.6% positive). 44.3 million were vaccinated (85.5%). +35275 cases, +13 deaths since a day ago. See https://offloop.net/covid19/?default=South%20Korea&legacy=no04:08
LjLthat's quite a wave04:10
LjLhope Topol is right and deaths won't follow04:10
LjLJapan, which preceded them, isn't doing very good death-wise https://offloop.net/covid19/?default=Japan;South%20Korea&byPopulation=yes&cumulative=no&smooth=yes&legacy=no04:11
LjL%cases japan04:12
BrainstormLjL: Japan has had 3.3 million confirmed cases (2.6% of all people) and 19341 deaths (0.6% of cases; 1 in 6512 people) as of 8 hours ago. 34.8 million tests were done (9.5% positive). 101.2 million were vaccinated (80.3%). +89818 cases, +68 deaths since 23 hours ago. See https://covid19japan.com/04:12
LjLlower vaccination rate, but decent04:12
TuvixLooks like South Korea already hit the wave with a very sharp decline in new-case reporting; OWID seems to show a death-rate that rose & fell, but before (⁇) the surge in cases04:13
TuvixOf course, the rise was nothing like the US which is my measuring stick now for how-not-to-manage-hospital-and-deaths04:13
LjLTuvix, the deaths are still from their (much smaller, case-wise) Delta wave04:13
LjLand i'm hearing rumors that they've curtailed testing greatly now04:13
TuvixUm, months apart?04:13
Tuvixhttps://ourworldindata.org/explorers/coronavirus-data-explorer?zoomToSelection=true&time=2021-07-24..2022-02-04&uniformYAxis=0&pickerSort=asc&pickerMetric=location&Metric=Vaccine+doses%2C+cases%2C+ICU+patients%2C+and+deaths&Interval=Biweekly&Relative+to+Population=true&Color+by+test+positivity=false&country=USA~KOR04:13
TuvixOh, bah, I had my case graph reversed (UK was a darker color before I switched, I wasn't reading it properly mentall.)04:14
LjLTuvix, months apart from the US you mean? the dynamics have been quite different in SE Asia04:14
TuvixSo, yea, that rise in S. Korea cases presumably translates to a yet-to-be-seen death rise.04:14
TuvixIndeed, looks like a November-ish Delta wave, and a Jan-Omicron wave they're still seeing the very beginning of now04:15
LjLTuvix, except, if one looks at Japan, it feels like comparatively, the deaths should already have started coming... look zoomed https://offloop.net/covid19/?default=Japan;South%20Korea&byPopulation=yes&cumulative=no&smooth=yes&leftTrim=500&legacy=no04:15
LjLi'm going by eye but the delay between cases and deaths i see in Japan... i think it's already passed in Korea?04:16
LjLor thereabouts04:16
LjLi still have no real idea how Japan could have *zero* covid cases for quite a while despite having no big restrictions, except to immigration, and between prior waves, they didn't reach *zero*04:18
TuvixBoth that and OWID seem to show Korea has having a death rise that precedes the still-ongoing case rise, so I don't know if they've yet to see the corresponding rise in death that'd be expected, or if there's some kind of weird reporting delay or other external cause for that.04:20
TuvixLooks like there was a small jump in cases just around late-Nov into mid Decmeber, but it seems both too early and sharp a rise in death for that to be the only factor.04:21
TuvixAlso interesting, the Omicron-related rise in Denmark's deaths. Now this said, comparing the Winter 2020-21 surge, they may end up only peaking at a bit over half the death rate with over 12 times the case-figure, although they still need a fast recovery or Omicron might end up claiming more lives total.04:30
TuvixThat more-lives-in-total possibility from the Denmark trends almost reminds me of the US comparison between Delta & Omicron.04:30
Tuvix(just comparing Denmark's prior-winter to curret-winter, to be clear about the surge differences.)04:30
LjLTuvix, it wasn't such a small jump... it was by far the biggest jump they'd ever had, *before* Omicron struck. so it was Delta, which was nasty.04:31
LjLit only seems small if you compare it to the current omicron04:31
LjLdoesn't seem very small like this https://offloop.net/covid19/?default=Japan;South%20Korea&byPopulation=yes&cumulative=no&smooth=yes&leftTrim=100&rightTrim=50&legacy=no04:31
TuvixAh, good catch. At full timescale, a log-y-axis expresses that much better.04:33
BrainstormNew from COVID on Twitter: Scott Gottlieb, MD (@ScottGottliebMD): Via @CNBC - China's zero-Covid policy 'won't work' with omicron: Epidemiologist cnbc.com/2022/02/07/chi… → https://twitter.com/ScottGottliebMD/status/149052739042194637304:33
BrainstormNew from COVID on Twitter: Scott Gottlieb, MD (@ScottGottliebMD): This may be one tragic legacy of the bitter fights inflamed by feds covid vax mandate for employers: “An examination of flu shot data suggests that which party people belong to is highly correlated with whether they have or will get a flu shot [... want %more?] → https://twitter.com/ScottGottliebMD/status/149052998675068928004:43
BrainstormUpdates for India: +812 cases, +1374446 tests (0.1% positive) since 6 hours ago06:09
BrainstormNew from COVID on Twitter: Michael Lin, MD PhD  (@michaelzlin): It makes sense to make the Cabinet representative of the country, but there's a right way to do it and a wrong way. This is the wrong way, and very wrong.Biden promised he'd take the pandemic seriously; putting someone who didn't want the job in charge [... want %more?] → https://twitter.com/michaelzlin/status/149055237242205388906:09
BrainstormNew from COVID on Twitter: Michael Lin, MD PhD  (@michaelzlin): At least she impressed the WH as someone who had the right executive skills. Again if the promise is to take COVID19 seriously, then put the best person you found in that job, don't put someone who didn't want it there.Becerra's legal background is a [... want %more?] → https://twitter.com/michaelzlin/status/149055313250119270406:19
BrainstormUpdates for Germany: +82363 cases since 23 hours ago — Guangxi, China: +38 cases since 23 hours ago — Northern Territory, Australia: +1 deaths since 2 days ago06:59
BrainstormNew from Politico: Time for a partnership on equal footing between Africa and the EU: While Europe gets back on track from COVID-19, the recovery of African countries is undermined by vaccine inequality. The S&D Group’s ‘Africa Week’ initiative seeks to [... want %more?] → https://www.politico.eu/sponsored-content/time-for-a-partnership-on-equal-footing-between-africa-and-the-eu/08:04
BrainstormNew from COVID on Twitter: Michael Lin, MD PhD  (@michaelzlin): Correctly, he described the disease as severe acute respiratory syndrome, or SARStwitter.com/michaelzlin/st… → https://twitter.com/michaelzlin/status/149058888383839846808:33
Trippy72894update please on where this is all going? are we out of the woods?08:40
* darsie is positive.08:41
BrainstormNew from COVID on Twitter: Michael Lin, MD PhD  (@michaelzlin): And before anyone tells me COVID-19 is not SARS, or that Dr. Li was wrong, read the linked thread. A correct description for the clinical presentation of severe disease from SARSCoV2 is SARS. → https://twitter.com/michaelzlin/status/149059104715134976008:43
BrainstormNew from EMA: What's new: Orphan: Orphan designation: Bifunctional fusion protein composed of two extracellular domains of transforming growth factor beta receptor II fused with a human immunoglobulin G1 monoclonal antibody against programmed death ligand 1, Treatment of biliary tract cancer, [... want %more?] → https://www.ema.europa.eu/en/medicines/human/orphan-designations/eu-3-18-211208:52
BrainstormNew from r/Coronavirus: Daily Discussion Thread | February 07, 2022: Please refer to our Wiki for more information on COVID-19 and our sub. You can find answers to frequently asked questions in our FAQ , where there is valuable information such as our: → https://old.reddit.com/r/Coronavirus/comments/smkuj6/daily_discussion_thread_february_07_2022/09:01
BrainstormUpdates for United Kingdom: +53365 cases since 18 hours ago09:04
BrainstormNew from Science-Based Medicine: Antivaxxers misuse the Defense Epidemiology Medical Database to demonize COVID-19 vaccines: Over the last couple of weeks, a claim that the Defense Medical Epidemiology Database (DMED) shows that COVID-19 vaccines [... want %more?] → https://sciencebasedmedicine.org/antivaxxers-misuse-the-defense-epidemiology-medical-database-to-demonize-covid-19-vaccines/09:20
BrainstormNew from COVID on Twitter: Gunhild Alvik Nyborg (@GANyborg): Is this ⬇️ a result of increased transmission (Covid is known to lead to psychosis & other severe psychiatric symptoms in some) - or is omicron different from earlier variants in this respect? (BA.2 dominant in Denmark now)Are we following the right [... want %more?] → https://twitter.com/GANyborg/status/149060679554243379709:49
BrainstormUpdates for New Caledonia: +2848 cases since 3 days ago10:06
BrainstormNew from COVID on Twitter: Gunhild Alvik Nyborg (@GANyborg): The main author of this study,  Jonas Herby, a libertarian economist, has written a piece for AIER, a main sponsor of Great Barrington Declaration, denying Covid mortality in Sweden, calling many of those who died “dry tinder”, aier.org/article/sweden… → https://twitter.com/GANyborg/status/149061209930279731210:07
BrainstormNew from COVID on Twitter: Gunhild Alvik Nyborg (@GANyborg): From OP: increasing psychiatric hospitalizations may be due to1. Increased no. of ppl in for other reasons, testing +2. Incr. no. of people infected w psych symptoms due to high rates in society or3. Higher risk of psych symptoms in omicron??? Only [... want %more?] → https://twitter.com/GANyborg/status/149061509286984499310:26
BrainstormNew from StatNews: Opinion: The Supreme Court is partly to blame for the Covid-19 test kit shortage: The lack of Covid diagnostic tests has been blamed on everything from the FDA to manufacturers. But there's another culprit: the U.S. Supreme Court. → https://www.statnews.com/2022/02/07/supreme-court-partly-to-blame-covid-19-test-kit-shortage/10:55
BrainstormNew from EMA: Human medicine assessment reports: (news): Human medicines European public assessment report (EPAR): Vaxzevria (previously COVID-19 Vaccine AstraZeneca), COVID-19 Vaccine (ChAdOx1-S [recombinant]), COVID-19 virus infection, Date of authorisation: 29/01/2021, [... want %more?] → https://www.ema.europa.eu/en/medicines/human/EPAR/vaxzevria-previously-covid-19-vaccine-astrazeneca11:24
BrainstormNew from r/COVID19: COVID19: What do we know about covid vaccines and preventing transmission? → https://www.reddit.com/r/COVID19/comments/smnarv/what_do_we_know_about_covid_vaccines_and/11:53
BrainstormNew from ECDC: ECDC: Data on the daily number of new reported COVID-19 cases and deaths by EU/EEA country → https://www.ecdc.europa.eu/en/publications-data/data-daily-new-cases-covid-19-eueea-country12:03
BrainstormUpdates for Germany: +78277 cases since 21 hours ago13:01
BrainstormNew from ScienceNews: Why being pregnant and unvaccinated against COVID-19 is a risky combo: Being pregnant puts an individual at higher risk for severe illness and death from COVID-19, but vaccination has lagged among pregnant people. → https://www.sciencenews.org/article/being-pregnant-unvaccinated-against-covid-19-risky13:10
xx^ being pregnant is already very risky, best to be avoided13:20
BrainstormNew from ECDC: Data on COVID-19 vaccination in the EU/EEA: Data in various file formats with information on COVID-19 vaccine doses administered, manufacturers, and target groups in the EU/EEA. → https://www.ecdc.europa.eu/en/publications-data/data-covid-19-vaccination-eu-eea13:29
BrainstormNew from COVID on Twitter: Florian Krammer (@florian_krammer): For most of us COVID-19 will not be the last pandemic we have to live trough. What CEPI is doing is extremely important for preparedness against future pandemics. We need more of it. Here is a commentary I wrote about it in 2020: [... want %more?] → https://twitter.com/florian_krammer/status/149066933771954996313:59
BrainstormUpdates for Kiribati: +201 cases since a day ago14:04
BrainstormNew from r/COVID19: Weekly Scientific Discussion Thread - February 07, 2022: This weekly thread is for scientific discussion pertaining to COVID-19. Please post questions about the science of this virus and disease here to collect them for others and clear up post space for [... want %more?] → https://www.reddit.com/r/COVID19/comments/smpokq/weekly_scientific_discussion_thread_february_07/14:09
BrainstormNew from COVID on Twitter: Marc Veldhoen (@Marc_Veld): Indirect Protection by Reducing Transmission: Ending the Pandemic With Severe Acute Respiratory Syndrome Coronavirus 2 Vaccinationacademic.oup.com/ofid/article/9… → https://twitter.com/Marc_Veld/status/149068010229171405014:37
BrainstormNew from Contagion Live: The Potential Benefits of Novavax COVID-19 Vaccine: The company recently submitted its data to the federal regulatory authorities for an Emergency Use Authorization of its COVID-19 vaccine, NVX-CoV2373. As it time to think about this potential vaccine being [... want %more?] → https://www.contagionlive.com/view/the-potential-benefits-of-novavax-covid-19-vaccine14:47
BrainstormUpdates for Switzerland: +58657 cases, +14 deaths since 2 days ago15:06
BrainstormNew from BBC Health: (news): Covid: Tough new targets will tackle NHS backlog, Boris Johnson says → https://www.bbc.co.uk/news/uk-6028963515:56
BrainstormUpdates for Brunei: +748 cases since a day ago16:08
BrainstormNew from COVID on Twitter: Eric Topol (@EricTopol): The first comprehensive assessment of the cardiovascular complications of #LongCovid at 1 year, just published @NatureMedicine nature.com/articles/s4159…by @zalaly and colleagues @WUSTLmed pic.twitter.com/FD4YRiA5es → https://twitter.com/EricTopol/status/149070319171282534516:15
BrainstormNew from StatNews: Video Chat: Virtual Event: The exhaustion epidemic: Examining the Covid-19 burnout crisis in health care → https://www.statnews.com/2022/02/07/virtual-event-the-exhaustion-epidemic-burnout/16:25
BrainstormNew from ClinicalTrials.gov: (news): Effect of the Nintendo Ring Fit Adventure Exergame on Running Completion Time → https://clinicaltrials.gov/ct2/show/NCT0522704017:04
BrainstormUpdates for Germany: +80507 cases, +20 deaths since 21 hours ago — Canada: +6714 cases, +41 deaths since 22 hours ago — United Kingdom: +130 cases since 21 hours ago17:11
BrainstormNew from ClinicalTrials.gov: (news): The Effect of the Emotional Freedom Technique on Students → https://clinicaltrials.gov/ct2/show/NCT0522756017:14
BrainstormNew from ClinicalTrials.gov: (news): Medication Use Evaluation for Enoxaparin in Hospitalized COVID-19 Patients → https://clinicaltrials.gov/ct2/show/NCT0522679317:24
BrainstormNew from ClinicalTrials.gov: Analysis of Health Status of Сomorbid Adult Patients With COVID-19 Hospitalised in Fourth Wave of SARS-CoV-2 Infection: Conditions :    COVID-19;   Chronic Heart Failure;   Diabetes Mellitus;   Chronic Kidney Diseases;   Ischemic Heart Disease;   Arrythmia;   [... want %more?] → https://clinicaltrials.gov/ct2/show/NCT0522641617:33
BrainstormUpdates for Netherlands: +77726 cases, +4 deaths since 23 hours ago18:01
BrainstormNew from ClinicalTrials.gov: Clinical Trial to Study the COVAC-2 Booster Dose in Generally Healthy Adults.: Conditions :    Generally Healthy Adult Who Have Received 2 Doses of Authorized COVID-19 Vaccine (For Phase 1 of the Study);   Generally Healthy Adult With a History of SARS-CoV-2 Infection (For Phase 2 Exploratory Group) → https://clinicaltrials.gov/ct2/show/NCT0522670218:02
BrainstormNew from ClinicalTrials.gov: (news): Impact of Lp299v on Vascular Function in Patients With PASC → https://clinicaltrials.gov/ct2/show/NCT0522717018:12
BrainstormNew from COVID on Twitter: jorgenponder — om coronavirusepidemin (@jorgenponder): @Dereklowe There have been studies from Pfizer/BioNTech on Omicron neutralization in human plasma from different variant specific vaccines, and there these seem to help better against Omicron than the original.twitter.com/whippletom/sta… → https://twitter.com/jorgenponder/status/149073624051739034318:21
BrainstormNew from COVID on Twitter: Eric Topol (@EricTopol): Children age < 10 had infrequent hospital admissions and the incidence did not differ significantly between Delta and Omicron pic.twitter.com/c0UXkA97ln → https://twitter.com/EricTopol/status/149073770724435148818:31
BrainstormNew from NPR Science: Australia will reopen to fully vaccinated travelers in 2 weeks: Australia will reopen for doubly vaccinated travelers on Feb. 21, nearly two years after it first closed its border. The move is  seen as welcome relief for its tourism industry. → https://www.npr.org/2022/02/07/1078866696/australia-reopens-border-international-travelers19:01
BrainstormUpdates for Italy: +41602 cases, +326 deaths, +393663 tests (10.6% positive) since a day ago19:03
BrainstormNew from Contagion Live: Tracking COVID-19 Spread at a Midsized University: During spring 2021, when Alpha was the dominant COVID-19 variant, a midsized Midwestern university’s vaccination initiative was associated with a significant decrease in COVID-19 infections. → https://www.contagionlive.com/view/tracking-covid-19-spread-at-a-midsized-university19:11
BrainstormNew from COVID on Twitter: Scott Gottlieb, MD (@ScottGottliebMD): BA.2 may be having a hard time outcompeting the prevalent Omicron variant BA.1 which got its foothold in the U.S. earlier, and has already created widespread near-term immunity to the Omicron strain. twitter.com/alexbolze/stat… → https://twitter.com/ScottGottliebMD/status/149075913089372160619:59
BrainstormUpdates for United Kingdom: +63409 cases, +45 deaths since 23 hours ago — Canada: +36 deaths since 23 hours ago20:06
BrainstormNew from COVID19 Vaccine Tracker: valerie: AnGes: AG0302-COVID19 → https://covid19.trackvaccines.org/vaccines/31/20:08
BrainstormNew from COVID19 Vaccine Tracker: valerie: Arcturus Therapeutics Inc: ARCT-165 → https://covid19.trackvaccines.org/vaccines/148/20:18
BrainstormUpdates for Spain: +120818 cases, +335 deaths since 2 days ago — Germany: +106874 cases, +105 deaths since 23 hours ago21:08
BrainstormNew from COVID on Twitter: Eric Topol (@EricTopol): A new piece by @DerekLowe on antibody imprinting frames the new results of the Omicron-specific vaccine vs the ancestral strain vaccine especially wellscience.org/content/blog-p… → https://twitter.com/EricTopol/status/149077854360890982421:16
LjLso Australia is also giving up on zero covid, eh21:30
Arsaneritapparently21:30
LjLit may still make sense for various meanings of "sense" to keep borders closed even if you've had a peak of 100k a day21:31
LjLbut i bet it's kind of hard to explain to a whole sector of society21:31
ArsaneritIt has costs.21:31
LjLas long as you actually manage to stay at virtually no cases, it's an easier sell21:31
Klindaas China is doing21:35
Klindano cases at all ahahah21:35
ArsaneritOf course they would tell us immediately if it broke out in a Uyghur prison camp </s>21:37
LjLsince when did we also have BA.3? https://en.wikipedia.org/wiki/SARS-CoV-2_Omicron_variant#Sublineages_and_BA.2_subvariant21:41
TurboTechGood afternoon21:44
BrainstormNew from COVID on Twitter: Eric Topol (@EricTopol): More on Covid cardiovascular complications todayAustralia report of >20,000 cases with subsequent (90-day) 15-fold risk of myocardial/pericarditis, 6-fold risk of pulmonary embolism, and 4-fold risk of heart attackpapers.ssrn.com/sol3/papers.cf… pic.twitter.com/fgjvXI2Vo2 → https://twitter.com/EricTopol/status/149078693145775718421:45
de-factoHowdy TurboTech :)21:48
TurboTechFantastic.  No one in my house ended up with Omicron.  One lady I work with did.  She was taking High Doses of Vitamin D. 10,000 IU daily for over a year and here Vitamin D level only hit 40ng/mL.  She has some type of resistance.  When she came back, I asked her how much sugar she consumes on a daily basis.  She said, "I have to be honest with you, even though I am diabetic and overweight, I am addicted to sugar."21:52
xx1) Diabetic 2) Overweight 3) Consumes processed sugar21:53
TurboTechMy supervisor is overweight, diabetic, and has high blood pressure.  He is black.  His wife came down with omicron,  He did not isolate from her.  He never went positive.21:54
TurboTechHe decreased his sugar intake when we first started studying it.21:54
xxpure luck, but something else is likely to kill him21:54
BrainstormNew from ##covid-19 Zotero group: Emergence of Omicron third lineage BA.3 and its importance: Type Journal Article Author Perumal A. Desingu Author K. Nagarajan Author Kuldeep Dhama URL https://onlinelibrary.wiley.com/doi/abs/10.1002/jmv.27601 Volume n/a Issue n/a Publication Journal of Medical Virology ISSN [... want %more?] → https://www.zotero.org/groups/covid_links/items/QHPHBSZN21:55
TurboTechWe all have tirtrated vitamin D levels over 50 ng/mL.21:55
xxLjL: has BA.3 even been detected in any large numbers? Afaik it's extinct.21:56
xxoh I see the nice diagram there21:57
TurboTechThis is not pure luck.  The fact that we set ourselves up with Fructose which reporgrams the very cell resonsible for pathogen recognition and signaling is huge and the fact that vitamin D in normal physiological is needed to regulate the monocyte and how it signals is the one two punch.  The oxidative burst from long term fructose intake and exposure to Covid 19 is throwing organ systems over a cliff.21:57
xxI meant that it's pure luck he did not get omicron (if it definitely was omicron) from his wife21:59
LjLxx, doesn't look extinct but also looks like very low prevalence. it's just the first time i even hear about it.22:00
TurboTechUric Acid production from Fructose metabolism in the liver and Sars CoV-2 use the same pathways to produce superoxides with the siganling of NLRP3 inflammasome.  We have been studying this for over a year.  We run RNA-PCR instruments that diganose Sars CoV-2.22:00
xxBA.2 just dominates so much that the other variants have a harder time to spread22:01
xxTurboTech: well good thing I eat <5g sugar a day for many years now22:02
de-factoTurboTech, here in Germany we currently run out of PCR testing capacity, i am curious, how big of a challenge is it for labs to scale this up (in short time) and also acquire enough supply chain capacity for the consumables?22:02
TurboTechThe fact that my Stepson moved home on January 2nd and was diagnosed with Covid 19 on january 5th (Omicron) and no one else in the house tested positive including an 80 year old who refused to be vaccinated speaks very highly of reduced sugar diet and significant antioxidant supplementation.22:02
TurboTechWe have three different instruments running Covid 19 Tests.22:03
TurboTechI think my facility has over 25,000 tests on hand.22:03
BrainstormNew from WebMD: Ottawa Declares State of Emergency Over Truckers COVID Protest: Ottawa Mayor Jim Watson declared a state of emergency in the Canadian capital as trucker-led protests over COVID-19 pandemic safety measures spread across the nation. → https://www.webmd.com/lung/news/20220207/ottawa-declares-state-of-emergency-over-truckers-covid-protest22:04
TurboTechWe run about 500 a day. There is no problem getting tests cartridges.  We run Biomerieux Eplex,  Cephiad xPert and a BD Max.22:07
de-factowe would need to massively scale up PCR testing capacity, at least by an order of magnitude and more here in Germany22:07
TurboTechThat is crazy.22:07
de-factotests cost 10-times as much here in Germany as in our neighbor Austria and the city of Vienna tests more than whole of Germany afaik22:08
TurboTechThat is unacceptable.22:08
de-factoso i wonder: is it due to lobby or is it a technical limit of the labs?22:08
TurboTechIt is Germany for Crying outloud.22:08
TurboTechIf I had to guess maybe a little bit of Both.22:09
TurboTechI bet they both have their hands tied up in it.22:09
TurboTechGoverment and Facilities.22:09
de-factoSynLab (Germany) vs LifeBrain (Austria)22:09
TurboTechHere the federal goverment is literally throwing antigen tests at people22:10
de-factoboth make profit, one by few expensive, the other by many cheap22:10
TurboTechEach household can order 4 tests per month.22:10
de-factoyeah antigen tests are ok-ish but PCR is much more sensitive22:10
TurboTechOf course.22:10
de-factolol 4 tests per month? wow thats almost nothing22:10
BrainstormUpdates for France: +2470 cases, +2 deaths since a day ago22:11
TurboTechThere is no supply chain issue at least at my facility.22:11
de-factowith rapid antigen tests each person would need 4 tests per week22:11
de-factowith PCR maybe 2 tests per week22:11
TurboTechWhy do people have to be tested that much?22:12
de-factorapid antigen tests are sold in every supermarket for 3 € or such, but PCR is very expensive, 50-100€ or such, i heard VIenna pays 6€ per PCR test22:12
de-factoOmicron22:12
TurboTechso22:13
TurboTechIt burned itself out.22:13
de-factonot yet22:13
de-factoat least not here22:13
de-factonumbers increasing, incidence diffusing into elderly unvaccinated groups22:13
TurboTechIt does not matter if you are vaccinated or not.22:14
de-factowe will see, hopefully all goes more or less well, but testing helps a lot with preventing spread22:14
TurboTechIt is not going to prevent infection.22:14
de-factoyeah but hospitalization22:14
BrainstormNew from CIDRAP: COVID-19 cases climb higher in parts of Asia: Lisa Schnirring | News Editor | CIDRAP News Feb 07, 2022 Hong Kong, which has taken a more aggressive "zero COVID" approach, reports a record 614 daily cases. → https://www.cidrap.umn.edu/news-perspective/2022/02/covid-19-cases-climb-higher-parts-asia22:14
de-factoby at least an order of magnitude or maybe even two22:14
xxBrainstorm: probably hamsters again22:15
Brainstormxx: but I still get infected by hamsters22:15
TurboTechDid you read the lastest study out of isreal regarding Vitamin D levels?22:15
de-factonope22:15
TurboTechhttps://journals.plos.org/plosone/article?id=10.1371/journal.pone.026306922:16
de-factooh TurboTech i also took Vitamin D since early 2020, 2000IU daily, and of course i got 3 shots of Moderna, so far never went symptomatic or positive, even when an household member got Omicron, wearing masks at home22:17
TurboTechWe did not wear masks at home with my stepson.22:17
TurboTechNot even the unvaccinated 80 year old.22:18
de-factooh wow ok...22:18
de-factoi mean i dont know where the threshold would have been, for that we would need 50% of people to get infected and then compare scenarios22:18
de-facto"Of 1176 patients admitted, 253 had records of a 25(OH)D level prior to COVID-19 infection. A lower vitamin D status was more common in patients with the severe or critical disease (<20 ng/mL [87.4%]) than in individuals with mild or moderate disease (<20 ng/mL [34.3%] p < 0.001)."22:20
de-facto"Patients with vitamin D deficiency (<20 ng/mL) were 14 times more likely to have severe or critical disease than patients with 25(OH)D ≥40 ng/mL (odds ratio [OR], 14; 95% confidence interval [CI], 4 to 51; p < 0.001)."22:20
TurboTechFor three days the kid was walking around with no mask on before he presented with signs and symptoms.  My wife drove him in a car to get tested while he was symptomatic with no masks on.22:20
TurboTechNo one came down with it.22:20
de-factoso they have seen a correlation, but its always hard to compensate for cofounding factors, e.g. maybe there is a shared reason for both, lower vitamin D level and severe covid22:21
de-factoor vise versa22:21
de-factowow ok, do you happen to know his CT value?22:22
TurboTechThat was the main part of the study.  They claim they were able to do just that.22:22
de-factooh ok cool, i did only read the abstract yet :P22:22
TurboTechphonecall22:23
BrainstormNew from COVID on Twitter: Marc Veldhoen (@Marc_Veld): On Boosters with VoC specific vaccines (beta and Omicron).Omicron Boosters and Original Antigenic Sinscience.org/content/blog-p… → https://twitter.com/Marc_Veld/status/149080270793808691422:43
BrainstormNew from COVID on Twitter: Marc Veldhoen (@Marc_Veld): "if a variant comes along that's horrific enough to show major immune evasion, that very property will make it something that a new vaccine booster is likely to be able to target usefully. Omicron isn't it, though." → https://twitter.com/Marc_Veld/status/149080271002260275222:52
BrainstormNew from COVID on Twitter: Michael Lin, MD PhD  (@michaelzlin): Aha, durability of responses after dose 3 was recently reported by Moderna. After dose 2, nAbs decreased 8x over 7mo for ancestral. After dose 3, this became 2x for ancestral, but 6x for Omicron.Fits most anti-Omicron B cells arising at/after shot [... want %more?] → https://twitter.com/michaelzlin/status/149080739659522048023:02
BrainstormNew from ##covid-19 Zotero group: mRNA-1273 or mRNA-Omicron boost in vaccinated macaques elicits comparable B cell expansion, neutralizing antibodies and protection against Omicron: Type Report Author Matthew Gagne Author Juan I. Moliva Author Kathryn E. Foulds Author Shayne F. Andrew Author Barbara J. Flynn Author [... want %more?] → https://www.zotero.org/groups/covid_links/items/MQ2MRV3S23:11
BrainstormNew from ##covid-19 Zotero group: LjL: @Dereklowe There have been studies from Pfizer/BioNTech on Omicron neutralization in human plasma from different variant specific vaccines, and there these seem to help better against Omicron than the original. https://t.co/9si9MGMKTChttps://www.zotero.org/groups/covid_links/items/Q8FW6H4C23:21
LjLsome original antigen sin suggestions23:21
LjLthis fact check is a bit underwhelming/perplexing https://www.politifact.com/factchecks/2022/jan/31/instagram-posts/numbers-were-based-faulty-data-military-spokespers/ at minimum, gawd the incompetence23:25
LjL(of the military department that curated this now-offline database)23:25
de-facto.title https://investors.biontech.de/static-files/47b4131a-0545-4a0b-a353-49b3a1d01789 from https://investors.biontech.de/events/event-details/press-conference-provide-update-omicron-variant23:36
Brainstormde-facto: From investors.biontech.de: PowerPoint-Präsentation23:36
de-factopage 11 shows data that would suggest that variant specific boosters do make a difference23:37
de-facto.title https://www.biorxiv.org/content/10.1101/2021.06.08.447308v2.full23:51
Brainstormde-facto: From www.biorxiv.org: The ChAdOx1 vectored vaccine, AZD2816, induces strong immunogenicity against SARS-CoV-2 Beta (B.1.351) and other variants of concern in preclinical studies | bioRxiv23:51
de-factoi think "best" would be a *multivalent* vaccine including all major VoCs23:53
de-factobut yeah, noone cares what i think, they do their thing23:53
TuvixWell, best would be something with both broad and long-lasting (at _least_ a year, more would be better) while retaining high-VE against at minimum severe outcomes including the need for medical intervention.23:54
de-factoi think that would be possible23:55
TuvixOf course, you can have the best solution, but in places where there's still a lot of widespread lack of interest in getting vaccinated, that's a factor too.23:55
TuvixI point to my own country as an example of how to do that badly, and our vaccination rates continue to decline (Omicron merely gave an ever-so-tiny bump to first-time-vaccine recipients then fell back to baseline declining levels.)23:56
TuvixIf (or more realistically, when) the next varient hits, I don't know if we'll be starting from much of a better place than our barely-below-average death rates post-Delta and pre-Omicron.23:57

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