libera/##covid-19/ Friday, 2021-09-03

BrainstormNew from Virological.org: Latest topics: Rapid molecular sequence characterization of the SARS-CoV-2 variant of interest Lambda (C.37):  Alexander G Lucaci 1 , Jordan D Zehr 1 , Stephen D Shank 1 , Steven Weaver 1 , Dave Bouvier 2 , Han Mei 2 , Anton Nekrutenko 2 , Sergei L Kosakovsky Pond 1 Institute for Genomics and Evolutionary Medicine, Temple [... want %more?] → https://is.gd/TinqL000:02
pwr22Australia seems to have a super conservative news setup00:06
pwr22It's all been anti covid measures00:06
pwr22Calling the uk lockdowns fascist police state stuff all along00:06
LjLThe Atlantic is an American paper00:07
LjLalso aside from COVID, Australia's government is super conservative00:07
pwr22Sure00:10
LjLi don't find it particularly impressive that they let Australians residing abroad enter Australian, and then trapped them in00:12
nixonixi think its not allowed to visit private homes if your buddies in sydney. maybe just some areas of it, not sure00:40
nixonixgladys, premier of nsw i think, had some strange speeches lately, where she painted rosy future when 70% have been fully vaccinated. they even made a mocking version of some of her speeches00:42
nixonixhttps://www.dailymail.co.uk/news/article-9945639/Coronavirus-Australia-Gladys-Berejiklian-reveals-one-restrictions-lifted-NSW.html00:43
nixonixit seems their states have a lot of power of their own00:44
BrainstormNew from Eric Topol: @EricTopol: The Delta wave impact in 14 countries by % vaccination and case spread—Israel, no longer in the top 10 for vaccination, is an outlier, > 100/100,000—the US and UK ~50/100,000—the rest are in descent or below 20/100,000Delta can be beat. 11 of 14 countries are doing it. → https://is.gd/FOO3IZ00:45
nixonixlambda is a variant of not much interest. ivermectin is a CoC, cure of concern00:46
nixonixoh, 70% of eligible. over 16 yo. 56% of all or something, they said in twitter. then everything will change *celebrates like randy marsh00:51
* nixonix opens up the gate in shark pool00:51
BrainstormNew from r/WorldNews: worldnews: Australia’s Home Quarantine App Uses Facial Recognition Technology To Make Sure You Haven’t Left Your House → https://is.gd/pq4nYK01:06
BrainstormNew from Eric Topol: @EricTopol: Hawaii had managed the pandemic well until Delta hit; the highest 1st dose vaccination rate for the US, 2nd dose above average. Hospitals are filled, 95% w/ unvaccinated residents. Oxygen is in shortage.A pattern seen in many island nations + [... want %more?] → https://is.gd/9t2mUQ01:17
nixonixyeah, we dont have much immunity from previous infections01:20
nixonixalmost in island. so we are in the same ship. lets not call it Titanic01:23
nixonixin=an01:23
nixonix.title https://twitter.com/RogerSeheult/status/143357139447481139601:29
Brainstormnixonix: From twitter.com: Roger Seheult, MD (@RogerSeheult): "Better to keep patients on high flow oxygen but high flow oxygen uses a lot more oxygen then ventilators. Hawaii is in a jam: [...]01:29
nixonixdamn. another reason to keep the cases low01:29
LjLlol <Brainstorm> New from r/Coronavirus: Coronavirus: Florida school district no longer accepts mask opt-out forms from chiropractors → https://is.gd/xcwt6T01:42
LjLchiropractors, totally entitled to determine that you must not wear a mask01:42
LjLhow even01:42
nixonixwhats gene stacking, that leonardi keeps mentioning? does it mean that genes that differ with variants are both present, unlike in recombination?01:44
specingmask opt-outs, keeeek01:45
LjLi don't know01:45
LjLhttps://en.wikipedia.org/wiki/Gene_stacking seems to refer to something different, or if it's similar, then i don't know how01:45
nixonixdo we have reliable results, that reinfections are less severe?01:52
nixonixin that danish study i think it wasnt apparent01:52
nixonixhave to check tomorrow01:52
nixonix.title https://twitter.com/DrEricDing/status/143335275569605017701:57
Brainstormnixonix: From twitter.com: Eric Feigl-Ding (@DrEricDing): "⚠️GOOD & BAD news on #DeltaVariant & vaccine effects on viral loads—Israel data now clearly shows waning of Pfizer jabs against Delta #COVID19 after 2 months—& then [...]01:57
nixonix.title https://twitter.com/fitterhappierAJ/status/1433221043884281858  check the tweets above too. i was wondering what he meant before the answer01:59
Brainstormnixonix: From twitter.com: Anthony J Leonardi, PhD, MS (@fitterhappierAJ): "reinfections are not assured to be less severe" | El Pajarito de NoGAFAM01:59
BrainstormUpdates for Dominica: +194 cases (now 1832) since 4 days ago — South Africa: +9202 cases (now 2.8 million), +418 deaths (now 82914), +57261 tests (now 16.6 million) since a day ago — Turkey: +5841 cases (now 6.4 million), +305047 tests (now 77.0 million) since 17 hours ago — Bulgaria: +1564 cases (now 459051), +51 deaths (now 19001), +25793 tests (now 4.3 million) since a day ago02:01
BrainstormNew from r/WorldNews: worldnews: Vaccine appointments more than doubled after Ontario Covid passport announcement. → https://is.gd/vx0o2C02:11
BrainstormNew from Virological.org: Latest posts: Genomic Surveillance of SARS-CoV-2 in the State of Rio de Janeiro, Brazil: technical briefing: [Update information - Genomic surveillance of the state of Rio de Janeiro, Brazil, in the period between August, 04th, 2021 and August, 16th, 2021] Since last update, we have sequenced new 377 SARS-CoV-2 genomes from [... want %more?] → https://is.gd/sFPG2a02:32
BrainstormUpdates for Palestine: +2773 cases (now 347730), +11 deaths (now 3699) since a day ago — Ukraine: +1959 cases (now 2.3 million), +42 deaths (now 55476) since 22 hours ago — France: +23988 cases (now 6.8 million), +2961 deaths (now 120469) since 22 hours ago — Tajikistan: +184 cases (now 17068), +1 deaths (now 125) since 12 hours ago02:38
nixonixAs expected, the Delta variant (lineages B.1.617.2, AY.4, AY.5, AY.6,  AY.7.1, AY.7.2, AY.12, AY.20 and AY.25) has become dominant in Rio de Janeiro and now corresponds to ~89.2% of the samples collected in August02:50
BrainstormNew from r/WorldNews: worldnews: Being fully vaccinated reduces odds of long Covid-19 by half, UK study suggests → https://is.gd/4j5zs202:53
BrainstormNew from r/WorldNews: worldnews: North Korea rejects offer of nearly 3 million Sinovac COVID-19 shots → https://is.gd/TB2oeR03:14
Raf[m]any talks of the mu variant in here yet?03:20
BrainstormNew from Virological.org: Latest topics: Evidence Against the Veracity of SARS-CoV-2 Genomes Intermediate between Lineages A and B:  Jonathan Pekar, Edyth Parker, Jennifer L. Havens, Marc A. Suchard, Kristian G. Andersen, Niema Moshiri, Michael Worobey, Andrew Rambaut, Joel O. Wertheim Early SARS-CoV-2 genomic diversity can be separated into two [... want %more?] → https://is.gd/Cf4KtT03:25
BrainstormNew from r/WorldNews: worldnews: Australia’s Home Quarantine App Uses Facial Recognition Technology To Make Sure You Haven’t Left Your House → https://is.gd/6LX89F03:57
Raf[m]New coronavirus mutant called mu variant being monitored by World Health Organization https://www.bostonherald.com/2021/09/02/new-coronavirus-mutant-called-mu-variant-being-monitored-by-world-health-organization/04:17
LjLi know it's being monitored, but that's all i know04:27
BrainstormUpdates for Mexico: +18138 cases (now 3.4 million), +649 deaths (now 261152), +48556 tests (now 9.9 million) since 23 hours ago — Egypt: +303 cases (now 289035), +12 deaths (now 16755) since a day ago — South Korea: +1709 cases (now 257110), +5 deaths (now 2308), +63167 tests (now 13.3 million) since 22 hours ago [... want %more?]04:30
lastshellhttps://www.nbcdfw.com/news/health/new-drug-shows-promise-as-covid-19-treatment/2733445/?amp04:53
twomoonnixonix can i ask you something privately?04:58
BrainstormNew from Eric Topol: @EricTopol: R to @EricTopol: Despite the lack of evidence, why did @joerogan and so many take Ivermectin?  Remember the emergency podcast to "save the world"? And that it was "99 percent effective" and "the pandemic would end in a month" but it was being suppressed by a [... want %more?] → https://is.gd/akxQhf05:01
twomoonhay evidencia que una infeccion mas 'intensa' genera una mejor diversidad de antibodies?05:13
BrainstormNew from r/WorldNews: worldnews: Brazil's worst drought in almost a century is threatening electricity supply and critical crops, pushing up energy and food prices at a time the country was hoping to start recovering from the economic fallout of the coronavirus pandemic → https://is.gd/XrPj3D05:54
BrainstormNew from r/WorldNews: worldnews: Kim Jong-un rejects Covax vaccine offer as North Korea fights pandemic in ‘our style’ → https://is.gd/tXEa5R06:48
BrainstormUpdates for Grenada: +153 cases (now 817), +1 deaths (now 4) since 21 hours ago — Pakistan: +3787 cases (now 1.2 million), +57 deaths (now 26035), +59745 tests (now 17.9 million) since 23 hours ago — Germany: +21419 cases (now 4.0 million) since 23 hours ago — Belgium: +2204 cases (now 1.2 million), +10 deaths (now 25392), +88676 tests (now 18.8 million) since 16 hours ago06:59
BrainstormNew from r/WorldNews: worldnews: Cuba prepares to vaccinate its children, entire population → https://is.gd/lo19ZF07:19
BrainstormNew from Politico: Coronavirus: UK and Australia announce vaccine swap deal → https://is.gd/lA5Ii507:30
BrainstormUpdates for Pennsylvania, United States: +4585 cases (now 1.3 million), +90 deaths (now 28325) since 23 hours ago — Bavaria, Germany: +2869 cases (now 681809), +8 deaths (now 15428) since 23 hours ago — New South Wales, Australia: +1417 cases (now 30807), +12 deaths (now 173) since 23 hours ago — Lower Saxony, Germany: +1136 cases (now 280753), +2 deaths (now 5859) since 23 hours ago08:01
BrainstormNew from EMA: What's new: Medicine: Veterinary medicines European public assessment report (EPAR): ProteqFlu-Te, equine influenza (live recombinant) and tetanus vaccine, Date of authorisation: 06/03/2003, Revision: 16, Status: Authorised → https://is.gd/gGfA4Y08:33
BrainstormNew from r/Coronavirus: Daily Discussion Thread | September 03, 2021: Please refer to our Wiki for more information on COVID-19 and our sub. You can find answers to frequently asked questions in our FAQ , where there is valuable information such as our: → https://is.gd/U33iJr09:05
BrainstormNew from The Indian Express: World: Vaccines not an option, life for families with young children → https://is.gd/BPE1eS09:58
BrainstormUpdates for India: +45352 cases (now 32.9 million), +149 deaths (now 439610), +5959837 vaccines (now 515.6 million) since 17 hours ago — Lithuania: +828 cases (now 301167), +14 deaths (now 4593) since 23 hours ago — Czechia: +308 cases (now 1.7 million), +1 deaths (now 30405), +6893 vaccines (now 6.0 million), +110844 tests (now 36.2 million) since a day ago [... want %more?]10:30
xrogaantwomoon: I don't think so.10:36
BrainstormNew from Reddit (test): CoronaVirus_2019_nCoV: ‘On the brink:’ Two-thirds of KY hospitals face critical shortages of staff, supplies → https://is.gd/Ca2bLx10:41
xrogaantwomoon: check the links of the episode: https://www.microbe.tv/twiv/twiv-799/10:44
twomoonthanks bro10:47
BrainstormNew from StatNews: Opinion: STAT+: A 10-point plan for sustaining the biopharma industrial base for a more secure nation: The U.S. runs the risk of repeating mistakes made in responding to Covid-19 and prior epidemics if it does not institute systemic changes to the way the government works with… → https://is.gd/VOdSlK10:51
BrainstormNew from Politico: EU and AstraZeneca settle court case over vaccine supply: The agreement will probably have little impact on vaccination within Europe, as the EU will end up donating many of these doses. → https://is.gd/987f8H11:02
BrainstormNew from The Indian Express: World: Kim Jong Un orders tougher virus steps after N Korea shuns vaccines → https://is.gd/bIai0N11:23
BrainstormNew from BMJ: Why Taiwan approved its own vaccine before phase III trials: On 19 July 2021, Medigen Vaccine Biologics became the first local company to win emergency approval from Taiwan’s regulator for a covid-19 vaccine candidate.But the drug’s approval has sparked... → https://is.gd/3EDT2411:34
BrainstormNew from r/WorldNews: worldnews: Kim Jong Un shuns vaccines to fight Covid North Korea 'style' → https://is.gd/suMwe411:55
BrainstormNew from The Indian Express (Health): Life-style: Trash to treasure: Thailand makes Covid-19 protective gear out of upcycled bottles → https://is.gd/yMkBOU12:06
BrainstormNew from The Indian Express: World: COVID surge in Southeast Asia disrupts global supply chains → https://is.gd/QXEVg412:16
BrainstormNew from The Indian Express: World: AstraZeneca reaches settlement with EU on COVID-19 vaccine delivery → https://is.gd/dFIwvz13:32
BrainstormNew from ECDC: ECDC awards 77 M€ to strengthen EU/EEA Member States’ capacities to detect and identify SARS-CoV-2 variants: ECDC has awarded more than 77 M€ to 24 EU/EEA countries to strengthen whole genome sequencing  and RT-PCR  infrastructures within the countries’ national public health programmes. → https://is.gd/KbvQXT13:42
BrainstormNew from ECDC: Data collection on COVID-19 outbreaks in closed settings with a completed vaccination programme: long-term care facilities: The main aim of this activity is to collect information on the severity of breakthrough COVID-19 infections in outbreaks at long-term care facilities (LTCFs) and to obtain a timely estimate of vaccine effectiveness [... want %more?] → https://is.gd/cUG6Ms14:04
BrainstormNew from BBC Health: Why vaccinating all teens is a difficult decision: Concerns over a very rare heart side-effect are giving vaccine experts pause for thought. → https://is.gd/0AJNRR14:25
BrainstormNew from StatNews: Pharma: STAT+: Pharmalittle: Lawmakers ramp up probe of FDA approval of Biogen drug; EU to return J&J Covid-19 shots to Africa → https://is.gd/FOzDNi15:30
BrainstormNew from WebMD: Kidney Damage Another Consequence of 'Long COVID': Researchers found that months after initial infection, COVID survivors were at increased risk of various types of kidney damage -- from reduced kidney function to advanced kidney failure. → https://is.gd/wPfYyr16:13
de-facto.title https://www.medrxiv.org/content/10.1101/2021.08.18.21262237v116:40
Brainstormde-facto: From www.medrxiv.org: Impact of Delta on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK | medRxiv16:40
BrainstormNew from BBC Health: Not enough benefit to offer all teens Covid jabs: But a larger group of 12-15 year olds with underlying conditions will get the vaccine. → https://is.gd/E6sDmJ16:46
BrainstormNew from Reddit (test): CoronavirusUK: JCVI not recommending vaccines for all 12 to 15-year-olds → https://is.gd/5H6zDz16:56
BrainstormNew from r/WorldNews: worldnews: Anti-vaxxers storm government building where Covid vaccine got green light → https://is.gd/oNbNCt17:07
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Kidney Outcomes in Long COVID ( https://www.zotero.org/groups/covid_links/items/WKCAS5IK )17:18
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Cerebral venous thrombosis and portal vein thrombosis: A retrospective cohort study of 537,913 COVID-19 cases ( https://www.zotero.org/groups/covid_links/items/5WCKTSIW )17:33
BrainstormNew from Reddit (test): Friday 03 September 2021 Update: submitted by /u/HippolasCage to r/CoronavirusUK → https://is.gd/yWphQ517:39
BrainstormNew from Politico: UK committee: Healthy kids aged 12-15 don’t need coronavirus vaccine: The government has come under heavy fire for not rolling out vaccinations to kids over 12 in time for their return to school. → https://is.gd/ACIj8618:00
BrainstormNew from Politico: EU, AstraZeneca declare a truce in vaccine delivery dispute: The agreement will probably have little impact on vaccination within Europe, as the EU will end up donating many of these doses. → https://is.gd/bmVYJS18:11
pwr22Going to a stag party tomorrow18:15
pwr22Chance of covid high I guess18:15
Cashlinmaybe dont go definitely wear a mask even if ur vaxxed18:15
pwr22I will be going and I'm unlikely to wear a mask all the time 🤷18:16
pwr22It is what it is - I'm going to take the risk18:16
de-factotake the risk, but make a test a few days later to know if you need to isolate or not18:20
de-factoalso could make sense to take a test prior to participation18:21
de-factoi do that all the time, e.g. today went to haircut shop, although i am fully vaccinated i made a test prior to that (would not be required but i do what i think makes sense)18:22
de-factoand for the personal risk: be aware that Delta is contagious enough that you also can catch it outdoors, even when vaccinated18:25
de-factorisk of severe progression is significantly lowered by vaccination, but it never is void, its all about probabilistic statements about big cohorts, never about individuals18:26
de-factoif i would make a party i just would require everyone to make a test a few hours prior to participation, regardless of vaccination or recovery status18:32
de-factoif someone refuses i would refuse entry18:32
BrainstormUpdates for United Kingdom: +42065 cases (now 6.9 million), +1292523 tests (now 273.3 million) since 15 hours ago — Turkey: +23656 cases (now 6.4 million), +283 deaths (now 57283) since 16 hours ago — Philippines: +20084 cases (now 2.0 million), +193 deaths (now 33873), +88473 tests (now 19.0 million) since a day ago [... want %more?]18:35
Cashlinde-facto is smart, yeah if you get it and live you can still lose your sense of smell and get debilitating life long side effects that no one knows the full effect and scope of19:00
BrainstormNew from WebMD: Americans' COVID Medical Bills Are Set to Rise: COVID-19 care is likely to get more expensive for Americans with the expiration of insurers' temporary waivers on costs associated with treating the illness. → https://is.gd/vcZ8Ab19:05
dTalde-facto: what's the false negative rate on the lateral flow tests? I thought it was so high as to be useless for that purpose19:25
dTalSpecifically, they only catch about half of asymptomatic cases19:26
dTalso widely distributing them might make a useful impact on R at a society-wide level, but at a personal, guaranteed-not-to-get-covid level they're not all that19:27
dTalthey're not going to make the difference between a "safe" party and a "risky" one19:29
dTalhttps://www.microcovid.org/ is useful, and scary, for estimating risk19:29
lapeste.title https://www.menshealth.com/health/a37465976/joe-rogan-covid-treatment-ivermectin-doctor-mike-explains/19:49
Brainstormlapeste: From www.menshealth.com: Doctor Explains Why Joe Rogan's Covid Treatment Makes No Sense19:49
BrainstormNew from The Indian Express: World: Soaring COVID-19 infections restrain US job gains in August → https://is.gd/TB8uOU20:09
de-factodTal, thats why i said a few hours in advance20:16
de-factosince lateral flow tests (rapid antigen tests) have a lower sensitivity than PCR tests they detect infections later in the initial exponential viral replication, hence have to be taken shorter before the participation20:17
de-factoideal would be always PCR but its not always possible to do that, so instead test often and short time prior to the event, that also helps20:18
de-factobetter than no test in any case20:18
de-factothe thing is, if someone would currently have a very high viral shedding load, hence could be source of a super spread, such rapid antigen tests *should* be able to detect that, if samples are taken properly and temperature range is correct etc20:20
de-factothere never will be a guarantee, false negatives will occur even with the best tests20:20
de-factoof course there will never be a "safe" party, but some measures can decrease the *probability* that it becomes a super spread event20:21
de-factoe.g. outdoors, testing, small controlled and closed cohort20:23
de-factoideal would be to be able to book a service that provides on-site PCR tests for all participants20:24
de-factobut are we there yet? PCR test as a service on site?20:24
trbpwho pays for all those tests?20:26
BrainstormNew from Eric Topol: @EricTopol: R to @EricTopol: The other @CDCgov report today in kids; impact of Delta and vaccinations in adolescents https://www.cdc.gov/mmwr/volumes/70/wr/mm7036e2.htm?s_cid=mm7036e2_whttps://is.gd/rlSNy420:31
lapeste"Lasse Lehtonen, Hus's director of diagnostics, does not consider home tests sold in the store to be a reliable way to ensure that he does not carry the coronavirus"20:34
lapesteIt is not just a sage sample or a secretion sample, but should contain cells that contain the virus. That’s why it’s challenging. You should be able to scratch the mucous membranes enough for the cells to come off, Lehtonen says. When performing an official corona test, it is requested to prune before testing to obtain cells instead of a stick.20:34
lapesteThe reality, of course, is that if a person wants a negative test result, it can be obtained just as easily if you put the tags on the hat and pulled from there. The probability of pulling a patch from a hat is in the same range as taking a home test. People practically always get a negative result.20:34
lapesteAccording to Lehtonen, there is a clear difference between antigen tests performed at home and antigen tests performed by professionals, the quality of which is strictly controlled according to health criteria.20:35
lapestehttps://translate.google.com/translate?sl=fi&tl=en&u=https://www.is.fi/kotimaa/art-2000008238956.html20:36
lapestemaybe they will find new cases sometimes, but the problem is, people use them instead of getting to pcr test. then think they are clear, when theres a very high chance they are not20:37
lapeste"The CSIRO health director has urged Australians to strongly consider getting the AstraZeneca vaccine after a new study showed it was more effective than Pfizer. Dr Rob Grenfell said the vaccine had proven to last longer and offer better protection than its competitor based on the latest statistics from the UK.20:38
lapeste'Remarkably, AstraZeneca was better. It actually performed better in reducing hospitalisations and deaths. And more importantly the immunity developed from the AstraZeneca appears to be longer than the Pfizer.'20:38
lapestewhy im not aware of those claimed uk statistics. are there such, or did he just lie?20:39
lapesteespecially for hospitalization. i checked uk govt stats. no such results. ic, ons, or some other instance, does anyone know?20:40
LjLwhat is this study that shows AstraZeneca is better? i did see that graph with AZ antibodies waning slower, but was that it?20:41
lapesteand that more lasting protection is just speculation based on that ab titer curve (pfizer was still ahead in it too, but az's curve was flatter. but CI's overlapped so, that it could actually be the other way around)20:41
LjLi don't know, the UK data tend to be pretty silent about vaccine vs vaccine20:41
lapesteyeah, ive noticed that...20:41
LjLthere are some data, but they're biased in all sorts of ways since the vaccines weren't giving to similar cohorts. so unless someone makes a competent matched cohort study, they don't mean much20:42
lapeste.title https://www.gov.uk/government/publications/covid-19-vaccine-surveillance-report20:43
Brainstormlapeste: From www.gov.uk: COVID-19 vaccine surveillance reports - GOV.UK20:43
lapeste.title https://www.bmj.com/content/374/bmj.n1960  good read20:43
Brainstormlapeste: From www.bmj.com: Covid-19: How effective are vaccines against the delta variant? | The BMJ20:43
lapeste.title https://www.nytimes.com/2020/03/19/opinion/sunday/coronavirus-camus-plague.html20:44
Brainstormlapeste: From www.nytimes.com: Opinion | Camus on the Coronavirus - The New York Times20:44
de-facto.title https://www.medrxiv.org/content/10.1101/2021.08.18.21262237v120:45
Brainstormde-facto: From www.medrxiv.org: Impact of Delta on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK | medRxiv20:45
de-factoTable 2 page 2520:47
BrainstormNew from CIDRAP: COVID-19 Scan for Sep 03, 2021: Vaccine protection against Delta Loss of taste, smell and COVID-19 Inmate release for COVID-19 → https://is.gd/wcHB0c20:52
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Impact of Delta on viral burden and vaccine effectiveness against new SARS-CoV-2 infections in the UK ( https://www.zotero.org/groups/covid_links/items/XKQEAUXJ )20:53
de-facto.title https://www.eurosurveillance.org/content/10.2807/1560-7917.ES.2021.26.35.210079320:55
Brainstormde-facto: From www.eurosurveillance.org: Eurosurveillance | Vaccine effectiveness against infection with the Delta (B.1.617.2) variant, Norway, April to August 202120:55
nixonixwhat in the table? bnt looks better, but is az winning in something? i might have older version, since its downloaded before the date in the link20:56
nixonixor do you mean the last column - is that reinfections?20:57
LjLi see nothing showing AZ is better20:57
nixonixcome on, whats there? point us to looking at the right information. reinfections are interesting tho20:59
de-factoi did not say AZ is better or such20:59
de-factoits just a study comparing the vaccines20:59
nixonixok. but are those reinfections?21:00
de-factothe last column "Not vaccinated, previously positive*" yeah21:00
nixonixsomewhat lower than in the danish study. maybe different period of variants tho21:01
LjLwhich would suggest previous infection doesn't necessarily help more than vaccines21:01
de-factobtw also a efficacy table on page 7 of https://www.gov.uk/government/publications/covid-19-vaccine-surveillance-report21:02
nixonixno it doesnt, althoug the hidden cases, share of them, might be different among reinf and vaxed21:02
de-factostill looks like BNT>AZ to me21:02
LjLsame to me21:02
LjLbut again these studies from the UK don't adjust things21:03
nixonixso we dont know for sure, exp that the study claiming over 10x better protection from infection than vax is incorrect. antivaxers  using that, which is the shame, because simpletons now think its better to just get infected, so that you wouldnt get infected, sigh...21:03
LjLthe raw data, i'm not qualified to interpret it21:03
de-factoprevious infection looks pretty similar to only *one* dose of Moderna21:03
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Vaccine effectiveness against infection with the Delta (B.1.617.2) variant, Norway, April to August 2021 ( https://www.zotero.org/groups/covid_links/items/U4BP8XM2 )21:03
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Covid-19: How effective are vaccines against the delta variant? ( https://www.zotero.org/groups/covid_links/items/3G9AE23W )21:03
nixonixinfection sucks in multiple ways21:03
nixonixmaybe it does some selection for traits tho21:04
LjLAmong people with negative COVID-19 test results, loss of taste or smell was more strongly associated with congestion or runny nose compared with those who had positive test results (odds ratios [ORs], 2.26 vs 1.66). Similarly, loss of taste or smell was more strongly associated with cough and fever if the COVID-19 test was negative, not positive (ORs, 1.16 to 1.57 vs 0.95 to 1.01).21:09
LjLhttps://www.cidrap.umn.edu/news-perspective/2021/09/covid-19-scan-sep-03-202121:09
LjLnot surprised about congestion, bit surprised about cough and fever21:09
BrainstormNew from StatNews: The White House wants $65 billion for an Apollo-style pandemic preparedness program: The Biden administration on Friday unveiled a sweeping, $65 billion proposal to remake the nation’s pandemic preparedness infrastructure in the wake of Covid-19. One adviser likened it to the Apollo… → https://is.gd/1SFF6C21:14
nixonixnow some of our hc officials are running with RSV argument, that it takes more kids to hospital than sars2 (so letting sars burn through unvccinated kids is ok)21:20
specingIs it just me or are hc officials worried more about hospital bed space than long term issues?21:21
nixonixbut true, surprisingly small numbers of kids needing hospital care and especially ICU, compared to some other countries. maybe its just the real infection numbers. for reasons like ventilation in schools, regional remote learning during high cases (exp during this delta period!) and stuff21:22
nixonixlong term issues, only thing they are paying attention is those persistent symptoms. permanent brain or other organ damage doesnt exist, if you dont complain21:23
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: India’s DNA COVID vaccine is a world first – more are coming ( https://www.zotero.org/groups/covid_links/items/2IH67RPD )21:23
nixonixso the only thing that could change that, would be studies showing prevalence of those, and published in lancet, nature etc. and other countries start to worry first, foreign media getting loud on subject etc21:24
LjLfor a change, there is no phase 3 paper out about ZyCov, and yet India just approved it21:25
nixonixdoes lancet work for you? site down?21:26
LjLdoesn't work for me21:27
nixonixoh yeah, that dna plasmid vaccine, with springy system for skin inoculation21:27
nixonixwheres published phase 3 result?21:28
LjLnowhere?21:29
nixonixABNCov2, some type of capsid vlp, i couldnt find much information on that another day. it was adjuvanted with squalene i think21:29
nixonixi was wondering if those harvested antigens somehow self-attach to nanoparticle, they cant possible glue them in sweatshop... it appears it uses glue, though21:30
de-facto.title https://www.whitehouse.gov/briefing-room/statements-releases/2021/09/03/fact-sheet-biden-administration-to-transform-capabilities-for-pandemic-preparedness/21:30
Brainstormde-facto: From www.whitehouse.gov: FACT SHEET: Biden Administration to Transform Capabilities for Pandemic Preparedness | The White House21:30
de-factothat makes a lot of sense, hope countries worldwide try to learn from what went wrong21:31
nixonixno english sources for use of glue, only finnish and apparently swedish where it was translated from - and prob danish. "With the help of a bacterial superglue developed by the researchers themselves, harmless virus molecules are glued to virus-like particles21:35
nixonixexp this, from translated article21:35
nixonixthere are some articles on bacterial superglue use with nanoparticles21:36
LjLglue O.o21:36
nixonix.title https://www.nature.com/articles/s41467-020-20251-8  doesnt mention that vaccine, but prob people behind the design, since there are danish21:38
Brainstormnixonix: From www.nature.com: Capsid-like particles decorated with the SARS-CoV-2 receptor-binding domain elicit strong virus neutralization activity | Nature Communications21:38
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: Biden wants $65 billion for &#39;Apollo&#39;-style pandemic preparedness program ( https://www.zotero.org/groups/covid_links/items/IQ4EB2SZ )21:38
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: On-the-Record Press Call by Office of Science and Technology Policy Director Dr. Eric Lander and NSC Director for Global Health Security and Biodefense Dr. Beth Cameron on American Pandemic Preparedness ( https://www.zotero.org/groups/covid_links/items/KI2783RI )21:38
nixonixglobal surveillance of virus sequences, studying vaccines for different types of viruses that could emerge. g-o-f studies with them. yeah i know...21:41
nixonixthey say that more intereste in hcov vaccines would have helped. luckily there was some research going on with sars1, mers21:42
LjLsomeone yesterday said something about gof research in a BSL2 lab21:44
nixonixyeah, wastewater surveillance in big cities of the world21:44
nixonix.title https://twitter.com/ForesightWisdom/status/143369718694925518221:51
Brainstormnixonix: From twitter.com: Foresight 👀, not Hopium 🤦‍♂️🔮🙈 (@ForesightWisdom): "Eran doesn't mention that are about 3000 ppl with Covid who are sitting at home with an oxygen generator from a public charity called "Yad Sarah". [...]21:51
nixonix.title https://twitter.com/EricTopol/status/1433627626749399080  podcast on vax hesitancy and stuff. prob many people like to listen to these, i prefer reading stuff (faster)21:54
Brainstormnixonix: From twitter.com: Eric Topol (@EricTopol): "I cited you and your Part 1 extensively in the podcast with @SamHarrisOrg which antedated the retraction of the Egypt trial https://samharris.org/podcasts/256-contagion-bad- [...]21:54
nixonix.title https://twitter.com/EricTopol/status/1433606986931662880  also a few more eric's posts in the thread on ivermectin, including links21:57
Brainstormnixonix: From twitter.com: Eric Topol (@EricTopol): "Not only has the data to support potential use of Ivermectin been exceptionally weak from small studies, but now 2 of the studies most cited have been shown to be fraudulent, [...]21:57
nixonix.title https://github.com/TheMemeticist/Cellular-Defense-Automata/tree/memeLab22:04
Brainstormnixonix: From github.com: GitHub - TheMemeticist/Cellular-Defense-Automata at memeLab22:04
BrainstormNew from CIDRAP: Child COVID hospital cases up in low-vaccination states: Stephanie Soucheray | News Reporter | CIDRAP News Sep 03, 2021 The US surge has driven child COVID hospitalization rates to pandemic highs. → https://is.gd/6tcIU222:07
nixonixthis seesm pretty comprehensive for medical acronyms: https://www.allacronyms.com/SAG/medical22:16
nixonix.title https://twitter.com/jacquesenboit/status/143377909953784218122:27
Brainstormnixonix: From twitter.com: Jacquesenboit (@jacquesenboit): "The 2P substitution K986P/V987P is not part of the SAg (~675:685). IOW, in no way it disrupts the SAg. @EricTopol Dec'20 : [...]22:27
BrainstormNew from r/WorldNews: worldnews: The pandemic’s true death toll → https://is.gd/CFX9YI22:39
BrainstormNew from CIDRAP: mRNA COVID vaccines not tied to serious side effects: Mary Van Beusekom | News Writer | CIDRAP News Sep 03, 2021 None of the specified outcomes in 6.2 million vaccine recipients met the criteria for a safety signal. → https://is.gd/nVV8EX22:49
nixonix.title https://www.pnas.org/content/117/41/25254  i dont know how confirmed these areas are currently. but interesting read anyway (and i havent checked if PRRAR->RRRAR from P681R changes something)22:51
Brainstormnixonix: From www.pnas.org: Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation | PNAS22:51
nixonixareas=ideas22:51
LjLhttps://www.economist.com/graphic-detail/coronavirus-excess-deaths-estimates22:53
LjL"To fill in these voids in our understanding of the pandemic, The Economist has built a machine-learning model, which estimates excess deaths for every country on every day since the pandemic began. It is based both on official excess-mortality data and on more than 100 other statistical indicators. Our final tallies use governments’ official excess-death numbers whenever and wherever they are available, and the model’s estimates in all other cases. You22:54
LjLcan read our methodology here, and inspect all our code, data, and models here."22:54
LjLhere being https://github.com/TheEconomist/covid-19-the-economist-global-excess-deaths-model22:55
nixonixi just made a very rough estimate in my head another day, without checking confirmed case numbers at many regions, or trying to estimate the shaere of hidden cases on them, and i got 13.5M. thinkin that doing what i didnt, i would prob adjust it but thought id be within 10-20%. close to economists estimate22:55
nixonixestimate->estimation. two of those22:56
nixonixno estimate of fatalities due to mrna vax, in that article. i couldnt find those when i looked for. yeah, for old or otherwise fragile its often hard to say the reason, but other than that, heart thinga or allergy induced... they havent found any?23:02
nixonixanyways if you find something some day, link me23:03
-RSSBot[LjLmatrix- Zotero / COVID links Group / Top-Level Items: The pandemic’s true death toll | The Economist ( https://www.zotero.org/groups/covid_links/items/P6DQJMF7 )23:03
nixonix.title https://twitter.com/fitterhappierAJ/status/1294200514566127622  year old, but leonardi just linked to it, good read the whole thread. afaik nothing in it is repealed yet, and some things have got more evidence23:14
Brainstormnixonix: From twitter.com: Anthony J Leonardi, PhD, MS (@fitterhappierAJ): "2/CT scans still the most sensitive way to diagnose infection in asymptomatic people compared to a one-off PCR. Heart damage irrespective of symptoms. [...]23:14
nixonix.title https://www.researchsquare.com/article/rs-847396/v123:33
Brainstormnixonix: From www.researchsquare.com: Correlates of Neutralizing/SARS-CoV-2-S1-binding Antibody Response with Adverse Effects and Immune Kinetics in BNT162b2-Vaccinated Individuals | Research Square23:33
nixonixwhat i recall from other studies, comparing them to qatar breakthrough times, it looked like 50% titeres somewhere below 150 and the protection for intection comes very weak (needs confirmation, if i recall that right)23:35
nixonixin that japanese study starting level for delta was 550, and vs beta (SA variant?) only 30023:35
nixonix" The average half-life of NT50s was ~ 68 days"23:36
nixonixusing that, around 4 months for delta to get under 150. and around 70 days for SA variant23:40
nixonixfour months vaccine vs delta infection. two months vs SA variant infection23:41
nixonixmaybe 2.523:41
BrainstormNew from Eric Topol: @EricTopol: How to lose public confidence?1. Announce a booster program on Sept 20 for all at 8 months post-vaccine2. Change it to 6 months, then 5 months, then back to 8 3. Lack of agreement among leadership group4. Have no US national data5. Announce the program will be "scaled back" → https://is.gd/OjmlFz23:43
nixonixthat means, when especially those age and behavioral group that are the main drivers, are vaccinated 5 or more months ago, and vaccine coverage or otherwise gained immunity is high, SA variant or some other good immune evasion variant will take over delta, and starts spreading among vaccinated and recovered23:56
nixonixthose vaccinated 5-6 months ago, the R vs SA variant would be around the same than those with no immunity vs uk. variant. couple months more, and its no better than no immunity at all23:58

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